SMTL ID : 4dg6.1

Crystal structure of domains 1 and 2 of LRP6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.262, A.263, T.264 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain A: V.464, N.467 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain A: R.412, N.414, T.416, M.417 Ligands: PO4.5 No protein-ligand interaction detected (PLIP)

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 6 residues within 4Å: Chain A: T.169, L.211, T.212, H.253, A.254, R.259 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.169, A:T.169, A:T.212, A:A.254 Salt bridges: A:H.253, A:R.259 PO4.5: 3 residues within 4Å: Chain A: R.396, L.413 Ligands: NAG-NAG.3 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Holdsworth, G. et al., Characterization of the interaction of sclerostin with the LRP family of Wnt co-receptors. To be Published

Release Date

2012-06-13

Peptides

Low-density lipoprotein receptor-related protein 6: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Low-density lipoprotein receptor-related protein 6