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SMTL ID : 4dho.1
Small-molecule inhibitors of 14-3-3 protein-protein interactions from virtual screening
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.70 Å
Oligo State
homo-dimer
Ligands
8 x
MG
:
MAGNESIUM ION
(Non-covalent)
MG.1:
1 residues within 4Å:
Chain A:
E.6
3
PLIP interactions
:
1 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
A:E.6
,
H
2
O.1
,
H
2
O.5
MG.2:
3 residues within 4Å:
Chain A:
E.39
,
E.114
,
G.116
5
PLIP interactions
:
3 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
A:E.39
,
A:E.39
,
A:E.114
,
H
2
O.7
,
H
2
O.8
MG.3:
1 residues within 4Å:
Chain A:
E.93
2
PLIP interactions
:
1 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
A:E.93
,
H
2
O.10
MG.4:
1 residues within 4Å:
Chain A:
E.165
4
PLIP interactions
:
1 interactions with chain A
,
3 Ligand-Water interactions
Metal complexes:
A:E.165
,
H
2
O.6
,
H
2
O.6
,
H
2
O.7
MG.9:
1 residues within 4Å:
Chain B:
E.6
3
PLIP interactions
:
1 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
B:E.6
,
H
2
O.14
,
H
2
O.18
MG.10:
3 residues within 4Å:
Chain B:
E.39
,
E.114
,
G.116
5
PLIP interactions
:
3 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
B:E.39
,
B:E.39
,
B:E.114
,
H
2
O.20
,
H
2
O.21
MG.11:
1 residues within 4Å:
Chain B:
E.93
2
PLIP interactions
:
1 interactions with chain B
,
1 Ligand-Water interactions
Metal complexes:
B:E.93
,
H
2
O.23
MG.12:
1 residues within 4Å:
Chain B:
E.165
4
PLIP interactions
:
1 interactions with chain B
,
3 Ligand-Water interactions
Metal complexes:
B:E.165
,
H
2
O.19
,
H
2
O.19
,
H
2
O.20
4 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.5:
4 residues within 4Å:
Chain A:
K.113
,
E.114
,
A.115
,
G.116
Ligand excluded by PLIP
CL.6:
4 residues within 4Å:
Chain A:
K.13
Chain B:
E.87
,
Y.88
,
K.91
Ligand excluded by PLIP
CL.13:
4 residues within 4Å:
Chain B:
K.113
,
E.114
,
A.115
,
G.116
Ligand excluded by PLIP
CL.14:
4 residues within 4Å:
Chain A:
E.87
,
Y.88
,
K.91
Chain B:
K.13
Ligand excluded by PLIP
2 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.7:
7 residues within 4Å:
Chain A:
M.206
,
L.209
,
Y.217
,
T.221
,
M.224
,
Q.225
,
R.228
4
PLIP interactions
:
4 interactions with chain A
Hydrogen bonds:
A:Y.217
,
A:T.221
,
A:R.228
,
A:R.228
GOL.15:
7 residues within 4Å:
Chain B:
M.206
,
L.209
,
Y.217
,
T.221
,
M.224
,
Q.225
,
R.228
4
PLIP interactions
:
4 interactions with chain B
Hydrogen bonds:
B:Y.217
,
B:T.221
,
B:R.228
,
B:R.228
2 x
Y09
:
(2-{2-[(3-methoxyphenyl)amino]-2-oxoethoxy}phenyl)phosphonic acid
(Non-covalent)
Y09.8:
8 residues within 4Å:
Chain A:
G.57
,
R.60
,
R.64
,
R.133
,
Y.134
,
L.178
,
N.179
,
V.182
15
PLIP interactions
:
15 interactions with chain A
Hydrophobic interactions:
A:L.178
,
A:V.182
Hydrogen bonds:
A:R.60
,
A:R.60
,
A:R.133
,
A:R.133
,
A:Y.134
,
A:Y.134
Water bridges:
A:K.53
,
A:R.64
,
A:R.64
,
A:R.64
,
A:R.64
,
A:N.179
pi-Cation interactions:
A:R.60
Y09.16:
8 residues within 4Å:
Chain B:
G.57
,
R.60
,
R.64
,
R.133
,
Y.134
,
L.178
,
N.179
,
V.182
14
PLIP interactions
:
14 interactions with chain B
Hydrophobic interactions:
B:L.178
,
B:V.182
Hydrogen bonds:
B:R.60
,
B:R.60
,
B:R.133
,
B:R.133
,
B:Y.134
Water bridges:
B:K.53
,
B:R.64
,
B:R.64
,
B:R.64
,
B:R.64
,
B:N.179
pi-Cation interactions:
B:R.60
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Thiel, P. et al., Virtual screening and experimental validation reveal novel small-molecule inhibitors of 14-3-3 protein-protein interactions. Chem.Commun.(Camb.) (2013)
Release Date
2013-07-31
Peptides
14-3-3 protein sigma:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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14-3-3 protein sigma
Toggle Identical (AB)
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