SMTL ID : 4diq.2 (1 other biounit)

Crystal Structure of human NO66

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.181, D.183, H.246 Ligands: PD2.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.181, A:D.183, A:H.246, H2O.2 NI.3: 4 residues within 4Å: Chain B: H.181, D.183, H.246 Ligands: PD2.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.181, B:D.183, B:H.246, H2O.5 NI.6: 4 residues within 4Å: Chain C: H.181, D.183, H.246 Ligands: PD2.7 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.181, C:D.183, C:H.246, H2O.6 NI.8: 4 residues within 4Å: Chain D: H.181, D.183, H.246 Ligands: PD2.9 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.181, D:D.183, D:H.246, H2O.10

4 x PD2: PYRIDINE-2,4-DICARBOXYLIC ACID(Non-covalent)

PD2.2: 11 residues within 4Å: Chain A: Y.169, F.178, H.181, D.183, K.196, W.198, H.246, A.248, H.258, T.260 Ligands: NI.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.169, A:F.178, A:W.198 Hydrogen bonds: A:F.178, A:T.260 Water bridges: A:F.178, A:A.248 Salt bridges: A:K.196, A:H.246, A:H.258, A:H.258 PD2.4: 11 residues within 4Å: Chain B: Y.169, F.178, H.181, D.183, K.196, W.198, H.246, A.248, H.258, T.260 Ligands: NI.3 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.169, B:F.178, B:W.198 Hydrogen bonds: B:F.178 Water bridges: B:Y.169, B:Y.169 Salt bridges: B:K.196, B:H.246, B:H.258, B:H.258 PD2.7: 11 residues within 4Å: Chain C: Y.169, F.178, H.181, D.183, K.196, W.198, H.246, A.248, H.258, T.260 Ligands: NI.6 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:Y.169, C:F.178, C:W.198 Hydrogen bonds: C:F.178, C:T.260 Water bridges: C:F.178, C:A.248 Salt bridges: C:K.196, C:H.246, C:H.258, C:H.258 PD2.9: 11 residues within 4Å: Chain D: Y.169, F.178, H.181, D.183, K.196, W.198, H.246, A.248, H.258, T.260 Ligands: NI.8 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:Y.169, D:F.178, D:W.198 Hydrogen bonds: D:F.178 Water bridges: D:Y.169, D:Y.169 Salt bridges: D:K.196, D:H.246, D:H.258, D:H.258

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain B: R.448, D.451 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.448 SO4.10: 2 residues within 4Å: Chain D: R.448, D.451 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:R.448

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vollmar, M. et al., Crystal Structure of human NO66. TO BE PUBLISHED

Release Date

2012-03-07

Peptides

Lysine-specific demethylase NO66: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Lysine-specific demethylase NO66

Related Entries With Identical Sequence