SMTL ID : 4dj7.1

Structure of the hemagglutinin complexed with 3SLN from a highly pathogenic H7N7 influenza virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

hetero-3-3-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: R.125, N.127 No protein-ligand interaction detected (PLIP)

3 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-GAL-SIA.2: 11 residues within 4Å: Chain A: Y.92, T.129, T.130, S.131, W.146, L.148, H.178, E.185, L.189, Q.221, G.223 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.185, A:Q.221, A:Q.221, A:T.129, A:S.131, A:H.178, A:Q.221, A:G.223 Hydrophobic interactions: A:L.189 NAG-GAL-SIA.3: 11 residues within 4Å: Chain C: Y.92, T.129, T.130, S.131, W.146, L.148, H.178, E.185, L.189, Q.221, G.223 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:Q.221, C:Q.221, C:T.129, C:S.131, C:H.178, C:Q.221, C:Q.221, C:G.223 Hydrophobic interactions: C:L.189 NAG-GAL-SIA.4: 11 residues within 4Å: Chain E: Y.92, T.129, T.130, S.131, W.146, L.148, H.178, E.185, L.189, Q.221, G.223 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:E.185, E:Q.221, E:Q.221, E:T.129, E:S.131, E:H.178, E:Q.221, E:Q.221, E:G.223 Hydrophobic interactions: E:L.189

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 4 residues within 4Å: Chain A: N.32, T.34, T.313 Chain B: L.52 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.32 NAG.6: 1 residues within 4Å: Chain A: N.235 No protein-ligand interaction detected (PLIP) NAG.7: 4 residues within 4Å: Chain B: E.72, R.75, N.79, N.82 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.72 Water bridges: B:N.82 NAG.8: 2 residues within 4Å: Chain C: R.125, N.127 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.127 NAG.9: 4 residues within 4Å: Chain C: N.32, T.34, T.313 Chain D: L.52 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain C: K.164, N.235 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.164 NAG.11: 5 residues within 4Å: Chain D: E.72, R.75, G.78, N.79, N.82 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.72, D:N.82 NAG.12: 2 residues within 4Å: Chain E: R.125, N.127 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.127 NAG.13: 4 residues within 4Å: Chain E: N.32, T.34, T.313 Chain F: L.52 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.32 NAG.14: 2 residues within 4Å: Chain E: K.164, N.235 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:K.164, E:N.235 NAG.15: 4 residues within 4Å: Chain F: E.72, R.75, N.79, N.82 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structure and receptor complexes of the hemagglutinin from a highly pathogenic H7N7 influenza virus. J.Virol. (2012)

Release Date

2012-06-20

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin

Hemagglutinin

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