- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
SF4.3: 11 residues within 4Å:- Chain C: P.13, K.15, N.16, C.17, G.18, E.19, C.20, C.25, F.28, C.42, P.43
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.17, C:C.20, C:C.25, C:C.42
SF4.10: 11 residues within 4Å:- Chain E: P.13, K.15, N.16, C.17, G.18, E.19, C.20, C.25, F.28, C.42, P.43
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.17, E:C.20, E:C.25, E:C.42
- 2 x B12: COBALAMIN(Non-covalent)
B12.4: 24 residues within 4Å:- Chain B: V.168
- Chain C: P.318, V.339, T.340, F.343, L.345, T.346, V.350, G.370, L.371, S.372, V.373, L.374, T.375, A.378, D.379, G.429, P.430, R.431, E.432, A.433
- Chain D: P.188, L.189, Y.226
12 PLIP interactions:9 interactions with chain C, 3 interactions with chain D,- Hydrophobic interactions: C:L.345, C:L.374, C:D.379, D:L.189, D:Y.226
- Hydrogen bonds: C:T.340, C:T.346, C:G.370, C:S.372, C:V.373, C:A.433, D:P.188
B12.11: 28 residues within 4Å:- Chain A: V.168, N.203
- Chain E: P.318, Y.338, V.339, T.340, F.343, L.345, T.346, S.349, G.370, L.371, S.372, V.373, L.374, T.375, A.378, D.379, I.406, P.408, P.430, R.431, E.432, A.433
- Chain F: P.188, L.189, Y.226, R.259
19 PLIP interactions:13 interactions with chain E, 4 interactions with chain F, 2 interactions with chain A,- Hydrophobic interactions: E:Y.338, E:L.345, E:L.374, E:T.375, E:D.379, E:P.408, F:L.189, F:Y.226, A:V.168
- Hydrogen bonds: E:T.340, E:G.370, E:S.372, E:S.372, E:S.372, E:V.373, E:A.433, F:P.188, F:R.259, A:N.203
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 10 residues within 4Å:- Chain D: D.38, P.42, F.43, I.50, P.54, R.235, L.292, G.295, A.296, H.297
7 PLIP interactions:7 interactions with chain D- Hydrogen bonds: D:D.38, D:F.43, D:R.235, D:R.235, D:G.295, D:G.295, D:A.296
GOL.6: 2 residues within 4Å:- Chain D: D.115
- Ligands: GOL.7
2 PLIP interactions:2 interactions with chain D- Water bridges: D:D.115, D:D.115
GOL.7: 2 residues within 4Å:- Chain D: D.115
- Ligands: GOL.6
1 PLIP interactions:1 interactions with chain D- Water bridges: D:D.115
GOL.8: 4 residues within 4Å:- Chain D: H.45, G.48, I.50, M.318
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:G.48, D:I.50, D:M.318
GOL.9: 4 residues within 4Å:- Chain D: T.28, K.122, Q.126, E.157
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:T.28
- Water bridges: D:A.155, D:E.157
GOL.12: 5 residues within 4Å:- Chain E: G.210, L.211, R.240, D.244
- Chain F: Y.323
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:L.211, E:D.244
- Water bridges: E:G.210
GOL.13: 5 residues within 4Å:- Chain E: E.237, S.239, R.240
- Chain F: V.319, S.320
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:R.240, E:R.240
GOL.14: 10 residues within 4Å:- Chain F: D.38, P.42, F.43, I.50, P.54, R.235, L.292, G.295, A.296, H.297
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:D.38, F:D.38, F:F.43, F:R.235, F:R.235, F:L.292
GOL.15: 4 residues within 4Å:- Chain F: H.45, I.50, M.318, S.320
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:H.45, F:I.50
GOL.16: 6 residues within 4Å:- Chain F: D.8, R.9, S.10, L.41, L.239, Q.240
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:D.8, F:L.236, F:Q.240
- Water bridges: F:E.47
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kung, Y. et al., Visualizing molecular juggling within a B12-dependent methyltransferase complex. Nature (2012)
- Release Date
- 2012-03-14
- Peptides
- 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase: AB
Corrinoid/iron-sulfur protein large subunit: CE
Corrinoid/iron-sulfur protein small subunit: DF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CE
ED
DF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x B12: COBALAMIN(Non-covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kung, Y. et al., Visualizing molecular juggling within a B12-dependent methyltransferase complex. Nature (2012)
- Release Date
- 2012-03-14
- Peptides
- 5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase: AB
Corrinoid/iron-sulfur protein large subunit: CE
Corrinoid/iron-sulfur protein small subunit: DF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CE
ED
DF
F