SMTL ID : 4dk8.1

Crystal structure of LXR ligand binding domain in complex with partial agonist 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-2-2-mer

Ligands

2 x 0KT: N-methyl-N-(4-{(1S)-2,2,2-trifluoro-1-hydroxy-1-[1-(2-methoxyethyl)-1H-pyrrol-2-yl]ethyl}phenyl)benzenesulfonamide(Non-covalent)

0KT.1: 22 residues within 4Å: Chain A: F.54, F.57, T.58, L.60, A.61, S.64, M.98, L.99, T.102, R.105, F.115, F.126, A.129, L.131, F.135, I.139, H.221, Q.224, L.228, L.235, L.239, W.243 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.54, A:F.54, A:F.57, A:T.58, A:F.115, A:F.115, A:L.131, A:L.131, A:L.228, A:L.228, A:W.243 0KT.7: 18 residues within 4Å: Chain C: F.54, F.57, T.58, L.60, A.61, S.64, M.98, L.99, T.102, F.115, F.126, A.129, L.131, F.135, I.139, H.221, Q.224, L.228 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:F.54, C:F.57, C:T.58, C:M.98, C:F.115, C:L.131, C:L.131, C:L.228 Halogen bonds: C:T.102

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 3 residues within 4Å: Chain A: E.111, R.144 Ligands: CA.5 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.144

6 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: Q.21, E.67, E.101 No protein-ligand interaction detected (PLIP) CA.4: 2 residues within 4Å: Chain A: T.120, D.125 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.125 CA.5: 2 residues within 4Å: Chain A: E.111 Ligands: ACT.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.111, A:E.111 CA.6: 2 residues within 4Å: Chain A: E.111, K.123 No protein-ligand interaction detected (PLIP) CA.8: 3 residues within 4Å: Chain C: Q.21, N.25, E.101 No protein-ligand interaction detected (PLIP) CA.9: 1 residues within 4Å: Chain C: T.120 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.120, C:T.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kopecky, D.J. et al., Discovery of a new binding mode for a series of liver X receptor agonists. Bioorg.Med.Chem.Lett. (2012)

Release Date

2012-03-21

Peptides

Oxysterols receptor LXR-beta: AC
Nuclear receptor coactivator 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Oxysterols receptor LXR-beta

Nuclear receptor coactivator 1

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