SMTL ID : 4dkd.1

Crystal Structure of Human Interleukin-34 Bound to Human CSF-1R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-2-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 9 residues within 4Å: Chain A: Y.51, E.52, V.54, F.55, N.59, R.62, V.128, K.140 Ligands: BMA.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.140 NAG-NAG.2: 9 residues within 4Å: Chain B: Y.51, E.52, V.54, F.55, N.59, R.62, V.128, K.140 Ligands: BMA.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.51, B:K.140 Hydrogen bonds: B:E.52, B:E.52

2 x BMA: beta-D-mannopyranose(Non-functional Binders)(Non-covalent)

BMA.3: 1 residues within 4Å: Ligands: NAG-NAG.1 No protein-ligand interaction detected (PLIP) BMA.4: 2 residues within 4Å: Chain B: Y.51 Ligands: NAG-NAG.2 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain C: N.57 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.57 NAG.6: 2 residues within 4Å: Chain C: H.135, N.137 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.137 NAG.7: 5 residues within 4Å: Chain C: N.224, F.254, Q.255, A.257, G.258 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:Q.255 Hydrogen bonds: C:N.224, C:Q.255 NAG.8: 3 residues within 4Å: Chain C: N.259, S.274, F.276 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.276 Hydrogen bonds: C:S.274

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, X. et al., Structural Basis for the Dual Recognition of Helical Cytokines IL-34 and CSF-1 by CSF-1R. Structure (2012)

Release Date

2012-04-11

Peptides

Interleukin-34: AB
Macrophage colony-stimulating factor 1 receptor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Interleukin-34

Macrophage colony-stimulating factor 1 receptor