SMTL ID : 4dki.1 (2 other biounits)

Structural Insights into the Anti- Methicillin-Resistant Staphylococcus aureus (MRSA) Activity of Ceftobiprole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x RB6: (2R)-2-[(1R)-1-{[(2Z)-2-(5-AMINO-1,2,4-THIADIAZOL-3-YL)-2-(HYDROXYIMINO)ACETYL]AMINO}-2-OXOETHYL]-5-({2-OXO-1-[(3R)-PYRROLIDIN-3-YL]-2,5-DIHYDRO-1H-PYRROL-3-YL}METHYL)-3,6-DIHYDRO-2H-1,3-THIAZINE-4-CARBOXYLIC ACID(Covalent)

RB6.1: 15 residues within 4Å: Chain A: S.381, K.384, Y.424, S.440, N.442, G.498, Q.499, K.575, S.576, G.577, T.578, A.579, E.580, M.619, A.620 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:T.578, A:M.619 Hydrogen bonds: A:S.378, A:S.378, A:S.381, A:S.440, A:S.440, A:N.442, A:Q.499, A:T.578, A:T.578, A:T.578, A:T.578 Salt bridges: A:H.561, A:K.575 pi-Stacking: A:Y.424

3 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.2: 4 residues within 4Å: Chain A: R.129, T.143, R.219, V.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.143, A:R.219 BCT.3: 4 residues within 4Å: Chain A: D.106, H.107, Q.115, K.116 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.106, A:H.107, A:K.116, A:K.116 BCT.4: 2 residues within 4Å: Chain A: K.131, D.301 No protein-ligand interaction detected (PLIP)

3 x CD: CADMIUM ION(Non-covalent)

CD.5: 3 residues within 4Å: Chain A: H.121, E.123 Ligands: CL.8 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.121, A:E.123 CD.6: 1 residues within 4Å: Chain A: H.210 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.210 CD.7: 3 residues within 4Å: Chain A: G.113, H.289 Ligands: CL.9 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:G.113, A:H.289

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 5 residues within 4Å: Chain A: H.121, E.123, T.278, V.280 Ligands: CD.5 Ligand excluded by PLIP CL.9: 6 residues within 4Å: Chain A: G.113, Q.115, Q.118, A.288, H.289 Ligands: CD.7 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, A.L. et al., Structural Insights into the Anti-methicillin-resistant Staphylococcus aureus (MRSA) Activity of Ceftobiprole. J.Biol.Chem. (2012)

Release Date

2012-08-01

Peptides

Penicillin-binding protein 2': A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein 2'

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