SMTL ID : 4dkj.1

CpG specific methyltransferase in complex with target DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 23 residues within 4Å: Chain A: F.17, A.18, G.19, I.20, G.21, S.22, Q.23, V.44, E.45, W.46, F.47, S.80, F.112, D.113, I.114, S.132, P.134, R.154, L.157, N.374, S.375, I.376 Chain B: C.8 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:I.20, A:G.21, A:S.22, A:W.46, A:D.113, A:D.113, A:I.114, A:S.132, A:S.132, A:R.154 Water bridges: A:Q.23, A:Q.23, A:N.374 pi-Stacking: A:F.17, A:F.17, A:W.46, A:W.46

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: Y.337, N.366, I.369 Chain C: A.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.366, A:N.366 Water bridges: A:L.338

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wojciechowski, M. et al., CpG underrepresentation and the bacterial CpG-specific DNA methyltransferase M.MpeI. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2012-12-05

Peptides

Cytosine-specific methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytosine-specific methyltransferase