SMTL ID : 4dlq.1

Crystal structure of the GAIN and HormR domains of CIRL 1/Latrophilin 1 (CL1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 9 residues within 4Å: Chain A: K.289, A.291, N.342, A.343, N.344, C.345, T.361, C.364, L.366 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.291

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: S.74, N.75, T.77, S.116 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.77 Hydrogen bonds: A:N.75 Water bridges: A:N.75 NAG.3: 3 residues within 4Å: Chain A: D.72, S.74, N.184 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.74, A:S.74, A:N.184 Water bridges: A:D.72, A:T.186 NAG.4: 2 residues within 4Å: Chain A: E.284, N.285 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.284, A:N.285 NAG.5: 4 residues within 4Å: Chain A: E.368, N.370, T.372, H.373 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.370, A:N.370, A:T.372

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 1 residues within 4Å: Chain A: K.338 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.338, A:K.338 Salt bridges: A:K.338 SO4.7: 4 residues within 4Å: Chain A: N.67, R.69, N.184, A.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.67, A:A.185 Water bridges: A:N.184 SO4.8: 3 residues within 4Å: Chain A: S.351, E.352, R.353 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.351, A:E.352, A:R.353 SO4.9: 3 residues within 4Å: Chain A: F.323, G.363, S.379 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.379 Water bridges: A:G.363, A:G.363, A:S.379 SO4.10: 5 residues within 4Å: Chain A: S.319, W.348, Y.350, L.381 Chain B: T.1 12 PLIP interactions: 7 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:Y.350, A:Y.350, A:L.381, B:T.1 Water bridges: A:E.200, A:S.319, A:S.319, A:S.319, B:T.1, B:N.2, B:N.2, B:N.2 SO4.11: 2 residues within 4Å: Chain A: V.29, R.30 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.30 Water bridges: A:R.31, A:R.31 Salt bridges: A:R.30 SO4.12: 4 residues within 4Å: Chain A: T.287, Y.358, S.360, Q.362 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.287, A:Y.358, A:S.360, A:Q.362 Water bridges: A:T.361 SO4.13: 6 residues within 4Å: Chain A: S.250, I.251, Q.252, I.329, F.330, T.331 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.250, A:Q.252, A:T.331, A:T.331, A:T.331

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.14: 4 residues within 4Å: Chain A: L.279, V.305, V.306, N.307 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.307 Water bridges: A:H.340 GOL.15: 4 residues within 4Å: Chain A: P.174, N.222, N.275, N.276 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.222, A:N.275, A:N.276 Water bridges: A:N.276, A:N.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arac, D. et al., A novel evolutionarily conserved domain of cell-adhesion GPCRs mediates autoproteolysis. Embo J. (2012)

Release Date

2012-02-22

Peptides

Latrophilin-1: A
Latrophilin-1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Latrophilin-1

Latrophilin-1