SMTL ID : 4dm0.1

TN5 transposase: 20MER OUTSIDE END 2 MN complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.97, E.326 Chain B: A.21 Ligands: MN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.97, A:E.326, A:E.326, H2O.1 MN.2: 4 residues within 4Å: Chain A: D.97, D.188 Chain B: A.21 Ligands: MN.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.97, A:D.188, H2O.1, H2O.11, H2O.11 MN.3: 2 residues within 4Å: Chain A: S.178, S.181 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.178, A:S.181, H2O.11 MN.5: 4 residues within 4Å: Chain D: D.97, E.326 Chain E: A.21 Ligands: MN.6 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.97, D:E.326, D:E.326, H2O.14 MN.6: 4 residues within 4Å: Chain D: D.97, D.188 Chain E: A.21 Ligands: MN.5 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.97, D:D.188, H2O.14, H2O.25, H2O.25 MN.7: 2 residues within 4Å: Chain D: S.178, S.181 3 PLIP interactions: 2 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:S.178, D:S.181, H2O.25

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: Q.37, S.49, S.50, E.51 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.51, A:E.51 EDO.8: 4 residues within 4Å: Chain D: Q.37, S.49, S.50, E.51 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovell, S. et al., Two-metal active site binding of a TN5 transposase synaptic complex. Nat.Struct.Biol. (2002)

Release Date

2012-02-22

Peptides

Transposase for transposon Tn5: AD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

Transposase for transposon Tn5