SMTL ID : 4dmb.1

X-ray structure of human hepatitus C virus NS5A-transactivated protein 2 at the resolution 1.9A, Northeast Structural Genomics Consortium (NESG) Target HR6723

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

3 x NO3: NITRATE ION(Non-functional Binders)

NO3.1: 5 residues within 4Å: Chain A: N.66, D.68, R.69, R.72 Chain B: D.68 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.66, A:R.69, A:R.69, B:D.68 NO3.3: 3 residues within 4Å: Chain A: N.66, R.69, E.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.66 Water bridges: A:R.69, A:R.69 NO3.8: 4 residues within 4Å: Chain A: D.68 Chain B: D.68, R.69, R.72 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.66, B:R.69, B:R.72

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: R.32, H.49, H.77, D.78, D.143 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.49, A:H.77, A:D.78, A:D.143 MG.4: 3 residues within 4Å: Chain A: D.78, E.81, D.86 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.81, A:D.86, H2O.1, H2O.1, H2O.3, H2O.4 MG.12: 4 residues within 4Å: Chain B: H.49, H.77, D.78, D.143 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.49, B:H.77, B:D.78, B:D.143, H2O.7 MG.13: 3 residues within 4Å: Chain B: D.78, E.81, D.86 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.81, B:D.86, H2O.4, H2O.4, H2O.4, H2O.7

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: P.43, E.44, S.45, D.48 Chain B: K.28, P.43 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.48, B:K.28 Water bridges: A:S.45, A:S.45, B:R.42

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 7 residues within 4Å: Chain A: R.32, T.33, G.34, W.35, D.86, M.147, F.167 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.34, A:W.35, A:W.35, A:W.35 Salt bridges: A:R.32 PO4.9: 8 residues within 4Å: Chain B: A.57, I.60, K.61, D.62, L.65, K.67, C.70, F.138 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.57, B:I.60, B:D.62 Water bridges: B:D.62, B:D.62 Salt bridges: B:K.67

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 6 residues within 4Å: Chain A: Q.165, Y.168, D.169, A.172, R.191, S.192 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.165, A:D.169, A:D.169, A:R.191 Water bridges: A:S.192 PEG.10: 6 residues within 4Å: Chain B: Q.26, R.29, V.30, C.82, I.83, G.85 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.83

1 x UNL: UNKNOWN LIGAND

UNL.11: 9 residues within 4Å: Chain B: R.32, T.33, G.34, W.35, D.86, A.88, P.89, M.147, F.167 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.32, B:T.33, B:G.34, B:W.35, B:I.87 Water bridges: B:R.32, B:R.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuzin, A. et al., Northeast Structural Genomics Consortium Target HR6723. To be Published

Release Date

2012-04-04

Peptides

HD domain-containing protein 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HD domain-containing protein 2