SMTL ID : 4dn5.1 (2 other biounits)

Crystal Structure of NF-kB-inducing Kinase (NIK)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: N.196, D.210 Ligands: AGS.8 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.210, H2O.1, H2O.1

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: S.297, C.298 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.297

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: G.150, Q.155, E.159, R.342 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.150, A:Q.155 EDO.4: 5 residues within 4Å: Chain A: R.167, D.202, G.203, S.204, S.339 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.167, A:R.167, A:G.203 EDO.5: 2 residues within 4Å: Chain A: E.68, R.70 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: F.87, R.113, G.212, H.213 Ligands: AGS.8 No protein-ligand interaction detected (PLIP) EDO.7: 2 residues within 4Å: Chain A: R.247, E.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.247 Water bridges: A:K.312

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.8: 24 residues within 4Å: Chain A: L.82, G.83, R.84, G.85, S.86, F.87, G.88, V.90, A.103, K.105, M.145, E.146, L.148, S.152, Q.155, D.191, D.195, N.196, L.198, D.210, G.212, H.213 Ligands: MG.1, EDO.6 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.85, A:S.86, A:F.87, A:G.88, A:E.146, A:L.148, A:S.152, A:D.195, A:D.210 Water bridges: A:K.105, A:K.193, A:D.195, A:D.195, A:N.196, A:N.196 Salt bridges: A:K.105, A:K.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Structure of Nuclear Factor Kappa B-inducing kinase domain reveals a constitutively active conformation. J.Biol.Chem. (2012)

Release Date

2012-06-27

Peptides

Mitogen-activated protein kinase kinase kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase kinase kinase 14

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