SMTL ID : 4dns.1 (1 other biounit)

Crystal structure of Bermuda grass isoallergen BG60 provides insight into the various cross-allergenicity of the pollen group 4 allergens

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.63, S.65, Q.68 No protein-ligand interaction detected (PLIP)

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.2: 30 residues within 4Å: Chain A: V.83, R.84, S.85, G.86, G.87, H.88, D.89, Y.90, S.94, S.127, G.150, V.151, C.152, I.155, G.156, G.158, G.159, H.160, G.165, F.166, G.211, E.212, G.215, I.216, V.217, Y.436, N.438, Y.439, R.440, N.489 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:H.88, A:Y.90, A:I.155 Hydrogen bonds: A:V.83, A:S.85, A:S.85, A:G.86, A:G.87, A:H.88, A:D.89, A:D.89, A:S.94, A:S.94, A:S.127, A:V.151, A:G.156, A:G.156, A:G.159, A:H.160, A:F.166, A:F.166, A:E.212, A:V.217, A:V.217, A:Y.436, A:N.438, A:Y.439, A:R.440, A:N.489 Water bridges: A:Y.90, A:L.93, A:G.211, A:E.212, A:N.438, A:R.440 pi-Stacking: A:H.160

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.300, T.302, H.303 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, T.H. et al., Various cross-reactivity of the grass pollen group 4 allergens: crystallographic study of the Bermuda grass isoallergen Cyn d 4. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-12-05

Peptides

FAD-linked oxidoreductase BG60: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

FAD-linked oxidoreductase BG60

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