SMTL ID : 4dq6.1

Crystal structure of PLP-bound putative aminotransferase from Clostridium difficile 630

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 13 residues within 4Å: Chain A: G.98, V.99, I.100, P.101, Y.124, C.171, N.175, D.203, I.205, H.206, K.238 Chain B: Y.65, D.269 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.124, A:Y.124, A:I.205, A:I.205, A:K.238 Hydrogen bonds: A:V.99, A:I.100, A:N.175, B:Y.65 Water bridges: A:Y.124, A:Y.124 pi-Stacking: A:Y.124 PLP.4: 13 residues within 4Å: Chain A: Y.65, D.269 Chain B: G.98, V.99, I.100, P.101, Y.124, C.171, N.175, D.203, I.205, H.206, K.238 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.124, B:Y.124, B:I.205, B:I.205, B:K.238 Hydrogen bonds: B:V.99, B:I.100, B:N.175, A:D.269 Water bridges: B:Y.124, B:Y.124, B:T.237 pi-Stacking: B:Y.124

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: L.146, N.148, N.150 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: M.314, P.315, K.316 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: M.314, P.315, K.316 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shabalin, I.G. et al., Crystal structures of putative aminotransferase from Clostridium difficile630. to be published

Release Date

2012-02-29

Peptides

Putative pyridoxal phosphate-dependent transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative pyridoxal phosphate-dependent transferase

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