SMTL ID : 4dqh.1

Crystal Structure of (R14C/E65C) HIV-1 Protease in complex with DRV

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

1 x 017: (3R,3AS,6AR)-HEXAHYDROFURO[2,3-B]FURAN-3-YL(1S,2R)-3-[[(4-AMINOPHENYL)SULFONYL](ISOBUTYL)AMINO]-1-BENZYL-2-HYDROXYPROPYLCARBAMATE(Non-covalent)

017.1: 24 residues within 4Å: Chain A: R.8, L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, V.82 21 PLIP interactions: 12 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:V.32, A:P.81, A:V.82, A:I.84, B:L.23, B:V.82 Hydrogen bonds: A:R.8, A:D.30, A:D.30, B:D.25, B:G.27, B:G.27, B:D.29, B:D.30 Water bridges: A:D.29, A:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mittal, S. et al., Hydrophobic core flexibility modulates enzyme activity in HIV-1 protease. J.Am.Chem.Soc. (2012)

Release Date

2012-03-07

Peptides

Wild-type HIV-1 protease dimer: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Wild-type HIV-1 protease dimer