SMTL ID : 4dqm.1 (1 other biounit)

Revealing a marine natural product as a novel agonist for retinoic acid receptors with a unique binding mode and antitumor activity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-oligomer

Ligands

1 x LUF: (5S)-4-[(3E,7E)-4,8-dimethyl-10-(2,6,6-trimethylcyclohex-1-en-1-yl)deca-3,7-dien-1-yl]-5-hydroxyfuran-2(5H)-one(Covalent)

LUF.1: 18 residues within 4Å: Chain A: F.18, F.47, L.50, S.51, C.54, L.85, L.88, R.91, I.92, R.95, F.105, S.106, D.107, G.120, F.121, G.210, V.214, L.233 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.18, A:F.47, A:F.47, A:F.47, A:L.85, A:L.88, A:L.88, A:R.91, A:I.92, A:I.92, A:F.105, A:F.121, A:V.214, A:L.233 Hydrogen bonds: A:D.107 Salt bridges: A:R.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., Revealing a natural marine product as a novel agonist for retinoic acid receptors with a unique binding mode and inhibitory effects on cancer cells. Biochem.J. (2012)

Release Date

2012-10-03

Peptides

Retinoic acid receptor alpha: A
Nuclear receptor coactivator 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Retinoic acid receptor alpha

Nuclear receptor coactivator 1

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