SMTL ID : 4dqo.1

Crystal Structure of PG16 Fab in Complex with V1V2 Region from HIV-1 strain ZM109

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.44 Å
Oligo State
hetero-1-1-1-mer
Ligands
1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x NAG- NAG- BMA- MAN- NAG- GAL- SIA- MAN- MAN- MAN: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Pancera, M. et al., Structural basis for diverse N-glycan recognition by HIV-1-neutralizing V1-V2-directed antibody PG16. Nat.Struct.Mol.Biol. (2013)
Release Date
2013-03-06
Peptides
PG16 Fab Heavy Chain: A
PG16 Fab Light Chain: B
1FD6-V1V2 scaffold ZM109 HIV-1 strain: C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
H
B
L
C
C

PG16 Fab Heavy Chain

PG16 Fab Light Chain

1FD6-V1V2 scaffold ZM109 HIV-1 strain

Related Entries With Identical Sequence

3u2s.1 | 3u2s.2