SMTL ID : 4dru.1 (1 other biounit)

HCV NS5B in complex with macrocyclic INDOLE INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 0LN: 13-cyclohexyl-3-methoxy-17,22-dimethyl-7H-10,6-(methanoiminothioiminobutanoiminomethano)indolo[2,1-a][2]benzazepine-14,23-dione 16,16-dioxide(Non-covalent)

0LN.1: 14 residues within 4Å: Chain A: H.33, H.34, V.37, L.392, A.393, A.395, A.396, I.424, H.428, L.492, V.494, P.495, W.500, R.503 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.392, A:A.395, A:A.396, A:I.424, A:L.492, A:V.494, A:W.500 Hydrogen bonds: A:H.34, A:R.503, A:R.503

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.48, K.51, T.221, R.222, C.223 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.223 Water bridges: A:F.224, A:F.224 Salt bridges: A:R.48, A:K.51 SO4.3: 2 residues within 4Å: Chain A: K.79, D.244 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.244 Salt bridges: A:K.79 SO4.4: 2 residues within 4Å: Chain A: H.475, S.476 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.476 Water bridges: A:Y.477 Salt bridges: A:H.475 SO4.5: 3 residues within 4Å: Chain A: L.60, L.68, V.235 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: L.82, L.83, I.85, R.120, W.123, M.173 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.83, A:I.85, A:R.120 GOL.7: 6 residues within 4Å: Chain A: G.8, A.9, L.10, I.11, S.46, Q.49 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.8, A:I.11, A:Q.49 Water bridges: A:A.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cummings, M.D. et al., Structure-based macrocyclization yields hepatitis C virus NS5B inhibitors with improved binding affinities and pharmacokinetic properties. Angew.Chem.Int.Ed.Engl. (2012)

Release Date

2012-04-18

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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