SMTL ID : 4ds0.1

Cell attachment protein VP8* of a human rotavirus specifically interacts with A-type histo-blood group antigen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

1 x NAG- GAL- FUC- A2G: alpha-L-fucopyranose-(1-2)-[2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)]beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-FUC-A2G.1: 6 residues within 4Å: Chain A: R.40, S.126, Y.127, Y.128, L.129, T.130 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.129 Hydrogen bonds: A:R.40, A:R.112, A:T.130, A:T.130, A:S.126, A:Y.127, A:Y.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, L. et al., Cell attachment protein VP8* of a human rotavirus specifically interacts with A-type histo-blood group antigen. Nature (2012)

Release Date

2012-04-11

Peptides

Outer capsid protein VP4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Outer capsid protein VP4

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