SMTL ID : 4ds5.2 (1 other biounit)

Ternary complex of Bacillus DNA Polymerase I Large Fragment, DNA duplex, and rCTP in presence of Mg2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x DC- DC- DT- DG- DA- DC- DT- DC- DC: DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*C)-3')(Non-covalent)

DC-DC-DT-DG-DA-DC-DT-DC-DC.1: 35 residues within 4Å: Chain A: P.247, T.266, K.267, T.268, S.271, T.272, S.273, A.274, L.291, R.294, Q.295, K.298, L.299, Y.303, R.331, Q.340, N.341, I.342, P.343, I.344, R.345, L.346, R.353, V.544, H.545, D.546 Chain B: G.5, G.6, A.7, G.8, T.9, C.10, A.11, G.12, G.13 Protein-ligand interaction information (PLIP) not available

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 1 residues within 4Å: Chain A: R.393 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.393 SO4.3: 3 residues within 4Å: Chain A: R.139, P.140, A.143 No protein-ligand interaction detected (PLIP) SO4.4: 4 residues within 4Å: Chain A: R.22, T.24, E.25, E.26 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.25 Water bridges: A:E.26 Salt bridges: A:R.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W. et al., Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides. J.Biol.Chem. (2012)

Release Date

2012-06-06

Peptides

DNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

DNA polymerase

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