SMTL ID : 4dtc.1

Crystal Structure of DPP-IV with Compound C5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x D5C: N-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butyl]-3'-(trifluoromethyl)biphenyl-4-carboxamide(Non-covalent)

D5C.1: 20 residues within 4Å: Chain A: R.87, E.167, E.168, V.169, S.171, F.319, R.320, P.321, S.322, E.323, Y.509, S.592, Y.593, V.618, W.621, Y.624, Y.628, N.672, V.673, H.702 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.319, A:F.319, A:F.319, A:R.320, A:V.673 Hydrogen bonds: A:E.167, A:Y.624 pi-Stacking: A:Y.628 Halogen bonds: A:R.320 D5C.2: 20 residues within 4Å: Chain B: R.87, E.167, E.168, V.169, S.171, F.319, R.320, P.321, S.322, E.323, Y.509, S.592, Y.593, V.618, W.621, Y.624, Y.628, N.672, V.673, H.702 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.319, B:F.319, B:R.320, B:V.673 Hydrogen bonds: B:E.167, B:E.167 pi-Stacking: B:Y.624, B:Y.628 Halogen bonds: B:P.321, B:E.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiong, B. et al., Crystal Structure of DPP-IV with Compound C5. To be Published

Release Date

2013-02-27

Peptides

Dipeptidyl peptidase 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidyl peptidase 4

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