SMTL ID : 4dum.1

Co-crystal structure of eIF4E with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

monomer

Ligands

1 x HLI: (4-{7-[2-(4-chlorophenoxy)ethyl]-2-(methylamino)-6-oxo-6,7-dihydro-1H-purin-8-yl}phenyl)phosphonic acid(Non-covalent)

HLI.1: 12 residues within 4Å: Chain A: F.71, W.79, L.83, D.113, S.115, P.123, M.124, W.125, E.126, R.180, K.185, W.189 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.71, A:W.79, A:L.83, A:D.113, A:W.125, A:W.125 Hydrogen bonds: A:W.125, A:E.126, A:R.180, A:R.180, A:K.185 pi-Stacking: A:W.79, A:W.79, A:W.125

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: W.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.96 EDO.3: 2 residues within 4Å: Chain A: W.96, N.100 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, X. et al., Structure-Guided Design, Synthesis, and Evaluation of Guanine-Derived Inhibitors of the eIF4E mRNA-Cap Interaction. J.Med.Chem. (2012)

Release Date

2012-04-11

Peptides

Eukaryotic translation initiation factor 4E: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Eukaryotic translation initiation factor 4E

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