SMTL ID : 4dun.1

1.76A X-ray Crystal Structure of a Putative Phenazine Biosynthesis PhzC/PhzF Protein from Clostridium difficile (strain 630)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: C.72, G.73, H.74, F.116, T.203, G.204, S.205 Ligands: BTB.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.73, A:H.74, A:G.204, A:S.205, A:S.205 Water bridges: A:S.205, A:S.205 Salt bridges: A:H.74 SO4.5: 8 residues within 4Å: Chain B: C.72, G.73, H.74, F.116, T.203, G.204, S.205 Ligands: BTB.6 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.73, B:H.74, B:G.204, B:S.205, B:S.205 Water bridges: B:S.205, B:S.205 Salt bridges: B:H.74

4 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.2: 11 residues within 4Å: Chain A: E.47, I.69, C.72, H.74, L.174, Y.191, C.193, D.200, T.203 Ligands: SO4.1, NI.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.191 Water bridges: A:D.200 Salt bridges: A:D.200 BTB.4: 3 residues within 4Å: Chain A: E.68, D.70, Q.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.68 Water bridges: A:Q.99 Salt bridges: A:D.70 BTB.6: 11 residues within 4Å: Chain B: E.47, I.69, C.72, H.74, L.174, Y.191, C.193, D.200, T.203 Ligands: SO4.5, NI.7 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.191, B:Y.191 Water bridges: B:N.20 Salt bridges: B:D.200 BTB.8: 3 residues within 4Å: Chain B: E.68, D.70, Q.99 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.68 Water bridges: B:Q.99 Salt bridges: B:D.70

2 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 3 residues within 4Å: Chain A: H.74, D.200 Ligands: BTB.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.74 NI.7: 3 residues within 4Å: Chain B: H.74, D.200 Ligands: BTB.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brunzelle, J.S. et al., 1.76A X-ray Crystal Structure of a Putative Phenazine Biosynthesis PhzC/PhzF Protein from Clostridium difficile (strain 630). To be Published

Release Date

2012-03-14

Peptides

Putative phenazine biosynthesis PhzC/PhzF protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Putative phenazine biosynthesis PhzC/PhzF protein