SMTL ID : 4dur.2 (1 other biounit)

The X-ray Crystal Structure of Full-Length type II Human Plasminogen

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)

NAG-GAL-SIA.1: 5 residues within 4Å: Chain A: T.346, A.347, P.348, P.349, M.404 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.346 Water bridges: A:S.383, A:S.383

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: R.68, K.392, F.419, R.426 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: R.234, N.707, K.708, N.711 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: F.205, P.206, N.207, K.208 Ligand excluded by PLIP

1 x K: POTASSIUM ION(Non-covalent)

K.5: 5 residues within 4Å: Chain A: S.170, R.220, E.221, L.222, N.294 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.221, A:N.294, H2O.13, H2O.16

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.6: 4 residues within 4Å: Chain A: I.682, G.684, K.698, G.739 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.682, A:G.739

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Law, R.H.P. et al., The X-ray crystal structure of full-length human plasminogen. Cell Rep (2012)

Release Date

2012-03-28

Peptides

Plasminogen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Plasminogen

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