SMTL ID : 4dvb.2 (1 other biounit)

The crystal structure of the Fab fragment of pro-uPA antibody mAb-112

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 9 residues within 4Å: Chain A: Q.39, T.40, P.41, K.43, T.90, A.91, M.92, T.112, E.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.147, A:A.167

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: S.25, G.26 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.26 Water bridges: A:K.3, A:K.3, A:N.76, A:N.76 SO4.3: 3 residues within 4Å: Chain A: G.55, S.56, T.57 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.56, A:T.57 SO4.4: 6 residues within 4Å: Chain A: P.14, S.87, V.115, S.116, S.117, A.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.115, A:S.117, A:A.118 SO4.5: 1 residues within 4Å: Chain B: R.109 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.109 Salt bridges: B:R.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, L. et al., Rezymogenation of active urokinase induced by an inhibitory antibody. Biochem.J. (2013)

Release Date

2013-01-16

Peptides

Fab fragment of pro-uPA antibody mAb-112: A
Fab fragment of pro-uPA antibody mAb-112: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Fab fragment of pro-uPA antibody mAb-112

Fab fragment of pro-uPA antibody mAb-112

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