SMTL ID : 4dxm.1

Crystal Structure of an ancestral GFP-like protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-tetramer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: V.146, R.147, D.148 Chain B: G.165 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:V.146, A:D.148 Water bridges: A:G.149, B:G.164, B:H.166 SO4.2: 4 residues within 4Å: Chain A: G.165 Chain B: V.146, R.147, D.148 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.148 Water bridges: B:D.148, B:G.149, A:G.165, A:H.166 SO4.3: 4 residues within 4Å: Chain C: G.165 Chain D: V.146, R.147, D.148 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.148, D:D.148, C:H.166 Water bridges: D:G.149, D:G.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, H. et al., A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins. Structure (2015)

Release Date

2013-02-27

Peptides

GREEN FLUORESCENT PROTEIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GREEN FLUORESCENT PROTEIN