SMTL ID : 4dxy.1

Crystal structures of CYP101D2 Y96A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 28 residues within 4Å: Chain A: Y.76, T.102, H.109, R.113, L.116, L.251, L.252, G.255, G.256, T.259, V.260, F.263, V.301, V.302, E.304, R.306, T.356, F.357, G.358, P.361, H.362, C.364, A.365, G.366, L.369, A.370, E.373 Ligands: PEG.2 17 PLIP interactions: 16 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:L.116, A:L.251, A:T.259, A:F.263, A:V.301, A:V.302, A:V.302, A:T.356, A:A.365 Hydrogen bonds: A:Y.76 Salt bridges: A:H.109, A:R.113, A:R.306, A:H.362 pi-Stacking: A:F.357 Metal complexes: A:C.364, H2O.4

5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 7 residues within 4Å: Chain A: L.251, G.255, T.259, V.302, E.304, V.403 Ligands: HEM.1 No protein-ligand interaction detected (PLIP) PEG.3: 6 residues within 4Å: Chain A: L.122, E.293, F.357, M.367, H.368, R.371 No protein-ligand interaction detected (PLIP) PEG.4: 5 residues within 4Å: Chain A: E.85, V.86, K.91, M.307, G.322 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.91 PEG.5: 8 residues within 4Å: Chain A: R.113, D.117, N.121, L.122, R.363, C.364, M.367, H.368 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.113, A:L.122 Water bridges: A:A.123 PEG.6: 5 residues within 4Å: Chain A: H.270, H.274, W.343, K.344, L.345 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.270, A:L.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bell, S.G. et al., Improving the affinity and activity of CYP101D2 for hydrophobic substrates. Appl.Microbiol.Biotechnol. (2012)

Release Date

2012-08-15

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450