SMTL ID : 4dyk.1

Crystal structure of an adenosine deaminase from pseudomonas aeruginosa pao1 (target nysgrc-200449) with bound zn

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.72, H.74, H.221, D.309 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.72, A:H.74, A:H.221, A:D.309, H2O.6 ZN.4: 4 residues within 4Å: Chain B: H.72, H.74, H.221, D.309 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.72, B:H.74, B:H.221, B:D.309, H2O.12

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: E.282, N.314, D.316, E.322 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.282, A:D.316, H2O.1, H2O.6, H2O.6 MG.5: 3 residues within 4Å: Chain B: E.282, N.314, D.316 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.282, B:D.316, H2O.1, H2O.12, H2O.12

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: A.84, D.85, D.86, L.87, W.92, K.286, L.287, A.312, S.313 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.85, A:D.86, A:L.87, A:L.87, A:K.286, A:K.286, A:A.312 Water bridges: A:N.315 GOL.6: 9 residues within 4Å: Chain B: A.84, D.85, D.86, L.87, W.92, K.286, L.287, A.312, S.313 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.86, B:L.87, B:L.87, B:K.286, B:A.312 Water bridges: B:K.286, B:N.315 GOL.7: 2 residues within 4Å: Chain A: F.291 Chain B: F.291 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Crystal structure of an adenosine deaminase from pseudomonas aeruginosa pao1 (target nysgrc-200449) with bound zn. to be published

Release Date

2012-03-14

Peptides

AMIDOHYDROLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AMIDOHYDROLASE