SMTL ID : 4dyz.1

Crystal Structure of the apo form of Human H-Ferritin variant MIC1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-24-mer

Ligands

24 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.23, A:E.58, A:H.61, H2O.1, H2O.2 CU.6: 4 residues within 4Å: Chain B: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.23, B:E.58, B:H.61, H2O.5, H2O.5 CU.11: 4 residues within 4Å: Chain C: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.23, C:E.58, C:H.61, H2O.8, H2O.9 CU.16: 4 residues within 4Å: Chain D: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.23, D:E.58, D:H.61, H2O.12, H2O.13 CU.21: 4 residues within 4Å: Chain E: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.23, E:E.58, E:H.61, H2O.15, H2O.16 CU.26: 4 residues within 4Å: Chain F: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:E.23, F:E.58, F:H.61, H2O.19, H2O.20 CU.31: 4 residues within 4Å: Chain G: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:E.23, G:E.58, G:H.61, H2O.22, H2O.23 CU.36: 4 residues within 4Å: Chain H: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:E.23, H:E.58, H:H.61, H2O.26, H2O.27 CU.41: 4 residues within 4Å: Chain I: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:E.23, I:E.58, I:H.61, H2O.30, H2O.30 CU.46: 4 residues within 4Å: Chain J: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:E.23, J:E.58, J:H.61, H2O.33, H2O.34 CU.51: 4 residues within 4Å: Chain K: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:E.23, K:E.58, K:H.61, H2O.37, H2O.38 CU.56: 4 residues within 4Å: Chain L: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:E.23, L:E.58, L:H.61, H2O.40, H2O.41 CU.61: 4 residues within 4Å: Chain M: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:E.23, M:E.58, M:H.61, H2O.44, H2O.45 CU.66: 4 residues within 4Å: Chain N: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:E.23, N:E.58, N:H.61, H2O.48, H2O.48 CU.71: 4 residues within 4Å: Chain O: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:E.23, O:E.58, O:H.61, H2O.51, H2O.52 CU.76: 4 residues within 4Å: Chain P: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:E.23, P:E.58, P:H.61, H2O.55, H2O.55 CU.81: 4 residues within 4Å: Chain Q: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:E.23, Q:E.58, Q:H.61, H2O.58, H2O.59 CU.86: 4 residues within 4Å: Chain R: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:E.23, R:E.58, R:H.61, H2O.62, H2O.63 CU.91: 4 residues within 4Å: Chain S: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:E.23, S:E.58, S:H.61, H2O.65, H2O.66 CU.96: 4 residues within 4Å: Chain T: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:E.23, T:E.58, T:H.61, H2O.69, H2O.70 CU.101: 4 residues within 4Å: Chain U: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:E.23, U:E.58, U:H.61, H2O.73, H2O.73 CU.106: 4 residues within 4Å: Chain V: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:E.23, V:E.58, V:H.61, H2O.76, H2O.77 CU.111: 4 residues within 4Å: Chain W: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:E.23, W:E.58, W:H.61, H2O.80, H2O.81 CU.116: 4 residues within 4Å: Chain X: E.23, E.58, H.61, Q.137 5 PLIP interactions: 3 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:E.23, X:E.58, X:H.61, H2O.83, H2O.84

96 x CA: CALCIUM ION(Non-covalent)

CA.2: 11 residues within 4Å: Chain A: L.165, H.169 Chain C: L.165, H.169 Chain U: L.165, H.169 Chain W: L.165, H.169 Ligands: CA.12, CA.102, CA.112 No protein-ligand interaction detected (PLIP) CA.3: 3 residues within 4Å: Chain A: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.57, H2O.1, H2O.1, H2O.1, H2O.4 CA.4: 8 residues within 4Å: Chain A: D.127, E.130 Chain E: D.127, E.130 Chain I: D.127, E.130 Ligands: CA.24, CA.44 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain I, 1 interactions with chain E Metal complexes: A:D.127, A:E.130, I:D.127, I:E.130, E:D.127 CA.5: 2 residues within 4Å: Chain A: D.80 Chain R: Q.82 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.80, H2O.3 CA.7: 11 residues within 4Å: Chain B: L.165, H.169 Chain D: L.165, H.169 Chain V: L.165, H.169 Chain X: L.165, H.169 Ligands: CA.17, CA.107, CA.117 No protein-ligand interaction detected (PLIP) CA.8: 3 residues within 4Å: Chain B: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.57, H2O.4, H2O.5, H2O.5, H2O.8 CA.9: 8 residues within 4Å: Chain B: D.127, E.130 Chain G: D.127, E.130 Chain L: D.127, E.130 Ligands: CA.34, CA.59 5 PLIP interactions: 2 interactions with chain L, 2 interactions with chain B, 1 interactions with chain G Metal complexes: L:D.127, L:E.130, B:D.127, B:E.130, G:D.127 CA.10: 2 residues within 4Å: Chain B: D.80 Chain T: Q.82 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.80, H2O.6 CA.12: 11 residues within 4Å: Chain A: L.165, H.169 Chain C: L.165, H.169 Chain U: L.165, H.169 Chain W: L.165, H.169 Ligands: CA.2, CA.102, CA.112 No protein-ligand interaction detected (PLIP) CA.13: 3 residues within 4Å: Chain C: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.57, H2O.8, H2O.8, H2O.8, H2O.11 CA.14: 8 residues within 4Å: Chain C: D.127, E.130 Chain H: D.127, E.130 Chain J: D.127, E.130 Ligands: CA.39, CA.49 5 PLIP interactions: 2 interactions with chain C, 1 interactions with chain H, 2 interactions with chain J Metal complexes: C:D.127, C:E.130, H:D.127, J:D.127, J:E.130 CA.15: 2 residues within 4Å: Chain C: D.80 Chain Q: Q.82 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.80, H2O.10 CA.17: 11 residues within 4Å: Chain B: L.165, H.169 Chain D: L.165, H.169 Chain V: L.165, H.169 Chain X: L.165, H.169 Ligands: CA.7, CA.107, CA.117 No protein-ligand interaction detected (PLIP) CA.18: 3 residues within 4Å: Chain D: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:E.57, H2O.11, H2O.12, H2O.12, H2O.15 CA.19: 8 residues within 4Å: Chain D: D.127, E.130 Chain F: D.127, E.130 Chain K: D.127, E.130 Ligands: CA.29, CA.54 5 PLIP interactions: 2 interactions with chain D, 2 interactions with chain K, 1 interactions with chain F Metal complexes: D:D.127, D:E.130, K:D.127, K:E.130, F:D.127 CA.20: 2 residues within 4Å: Chain D: D.80 Chain S: Q.82 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.80, H2O.13 CA.22: 11 residues within 4Å: Chain E: L.165, H.169 Chain G: L.165, H.169 Chain R: L.165, H.169 Chain T: L.165, H.169 Ligands: CA.32, CA.87, CA.97 No protein-ligand interaction detected (PLIP) CA.23: 3 residues within 4Å: Chain E: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain E, 4 Ligand-Water interactions Metal complexes: E:E.57, H2O.15, H2O.15, H2O.16, H2O.18 CA.24: 8 residues within 4Å: Chain A: D.127, E.130 Chain E: D.127, E.130 Chain I: D.127, E.130 Ligands: CA.4, CA.44 5 PLIP interactions: 2 interactions with chain E, 2 interactions with chain A, 1 interactions with chain I Metal complexes: E:D.127, E:E.130, A:D.127, A:E.130, I:D.127 CA.25: 2 residues within 4Å: Chain E: D.80 Chain O: Q.82 2 PLIP interactions: 1 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.80, H2O.17 CA.27: 11 residues within 4Å: Chain F: L.165, H.169 Chain H: L.165, H.169 Chain Q: L.165, H.169 Chain S: L.165, H.169 Ligands: CA.37, CA.82, CA.92 No protein-ligand interaction detected (PLIP) CA.28: 3 residues within 4Å: Chain F: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain F, 4 Ligand-Water interactions Metal complexes: F:E.57, H2O.18, H2O.19, H2O.19, H2O.22 CA.29: 8 residues within 4Å: Chain D: D.127, E.130 Chain F: D.127, E.130 Chain K: D.127, E.130 Ligands: CA.19, CA.54 5 PLIP interactions: 2 interactions with chain F, 2 interactions with chain D, 1 interactions with chain K Metal complexes: F:D.127, F:E.130, D:D.127, D:E.130, K:D.127 CA.30: 2 residues within 4Å: Chain F: D.80 Chain M: Q.82 2 PLIP interactions: 1 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:D.80, H2O.21 CA.32: 11 residues within 4Å: Chain E: L.165, H.169 Chain G: L.165, H.169 Chain R: L.165, H.169 Chain T: L.165, H.169 Ligands: CA.22, CA.87, CA.97 No protein-ligand interaction detected (PLIP) CA.33: 3 residues within 4Å: Chain G: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain G, 4 Ligand-Water interactions Metal complexes: G:E.57, H2O.22, H2O.23, H2O.23, H2O.25 CA.34: 8 residues within 4Å: Chain B: D.127, E.130 Chain G: D.127, E.130 Chain L: D.127, E.130 Ligands: CA.9, CA.59 5 PLIP interactions: 2 interactions with chain G, 1 interactions with chain L, 2 interactions with chain B Metal complexes: G:D.127, G:E.130, L:D.127, B:D.127, B:E.130 CA.35: 2 residues within 4Å: Chain G: D.80 Chain P: Q.82 2 PLIP interactions: 1 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:D.80, H2O.24 CA.37: 11 residues within 4Å: Chain F: L.165, H.169 Chain H: L.165, H.169 Chain Q: L.165, H.169 Chain S: L.165, H.169 Ligands: CA.27, CA.82, CA.92 No protein-ligand interaction detected (PLIP) CA.38: 3 residues within 4Å: Chain H: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain H, 4 Ligand-Water interactions Metal complexes: H:E.57, H2O.26, H2O.26, H2O.26, H2O.29 CA.39: 8 residues within 4Å: Chain C: D.127, E.130 Chain H: D.127, E.130 Chain J: D.127, E.130 Ligands: CA.14, CA.49 5 PLIP interactions: 2 interactions with chain C, 2 interactions with chain H, 1 interactions with chain J Metal complexes: C:D.127, C:E.130, H:D.127, H:E.130, J:D.127 CA.40: 2 residues within 4Å: Chain H: D.80 Chain N: Q.82 2 PLIP interactions: 1 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:D.80, H2O.28 CA.42: 11 residues within 4Å: Chain I: L.165, H.169 Chain K: L.165, H.169 Chain M: L.165, H.169 Chain O: L.165, H.169 Ligands: CA.52, CA.62, CA.72 No protein-ligand interaction detected (PLIP) CA.43: 3 residues within 4Å: Chain I: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain I, 4 Ligand-Water interactions Metal complexes: I:E.57, H2O.29, H2O.30, H2O.30, H2O.33 CA.44: 8 residues within 4Å: Chain A: D.127, E.130 Chain E: D.127, E.130 Chain I: D.127, E.130 Ligands: CA.4, CA.24 5 PLIP interactions: 2 interactions with chain E, 2 interactions with chain I, 1 interactions with chain A Metal complexes: E:D.127, E:E.130, I:D.127, I:E.130, A:D.127 CA.45: 2 residues within 4Å: Chain I: D.80 Chain U: Q.82 2 PLIP interactions: 1 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:D.80, H2O.31 CA.47: 11 residues within 4Å: Chain J: L.165, H.169 Chain L: L.165, H.169 Chain N: L.165, H.169 Chain P: L.165, H.169 Ligands: CA.57, CA.67, CA.77 No protein-ligand interaction detected (PLIP) CA.48: 3 residues within 4Å: Chain J: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain J, 4 Ligand-Water interactions Metal complexes: J:E.57, H2O.33, H2O.33, H2O.34, H2O.36 CA.49: 8 residues within 4Å: Chain C: D.127, E.130 Chain H: D.127, E.130 Chain J: D.127, E.130 Ligands: CA.14, CA.39 5 PLIP interactions: 2 interactions with chain H, 2 interactions with chain J, 1 interactions with chain C Metal complexes: H:D.127, H:E.130, J:D.127, J:E.130, C:D.127 CA.50: 2 residues within 4Å: Chain J: D.80 Chain W: Q.82 2 PLIP interactions: 1 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:D.80, H2O.35 CA.52: 11 residues within 4Å: Chain I: L.165, H.169 Chain K: L.165, H.169 Chain M: L.165, H.169 Chain O: L.165, H.169 Ligands: CA.42, CA.62, CA.72 No protein-ligand interaction detected (PLIP) CA.53: 3 residues within 4Å: Chain K: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain K, 4 Ligand-Water interactions Metal complexes: K:E.57, H2O.36, H2O.37, H2O.37, H2O.40 CA.54: 8 residues within 4Å: Chain D: D.127, E.130 Chain F: D.127, E.130 Chain K: D.127, E.130 Ligands: CA.19, CA.29 5 PLIP interactions: 2 interactions with chain K, 1 interactions with chain D, 2 interactions with chain F Metal complexes: K:D.127, K:E.130, D:D.127, F:D.127, F:E.130 CA.55: 2 residues within 4Å: Chain K: D.80 Chain V: Q.82 2 PLIP interactions: 1 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:D.80, H2O.38 CA.57: 11 residues within 4Å: Chain J: L.165, H.169 Chain L: L.165, H.169 Chain N: L.165, H.169 Chain P: L.165, H.169 Ligands: CA.47, CA.67, CA.77 No protein-ligand interaction detected (PLIP) CA.58: 3 residues within 4Å: Chain L: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain L, 4 Ligand-Water interactions Metal complexes: L:E.57, H2O.40, H2O.40, H2O.41, H2O.43 CA.59: 8 residues within 4Å: Chain B: D.127, E.130 Chain G: D.127, E.130 Chain L: D.127, E.130 Ligands: CA.9, CA.34 5 PLIP interactions: 2 interactions with chain L, 2 interactions with chain G, 1 interactions with chain B Metal complexes: L:D.127, L:E.130, G:D.127, G:E.130, B:D.127 CA.60: 2 residues within 4Å: Chain L: D.80 Chain X: Q.82 2 PLIP interactions: 1 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:D.80, H2O.42 CA.62: 11 residues within 4Å: Chain I: L.165, H.169 Chain K: L.165, H.169 Chain M: L.165, H.169 Chain O: L.165, H.169 Ligands: CA.42, CA.52, CA.72 No protein-ligand interaction detected (PLIP) CA.63: 3 residues within 4Å: Chain M: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain M, 4 Ligand-Water interactions Metal complexes: M:E.57, H2O.43, H2O.44, H2O.44, H2O.47 CA.64: 8 residues within 4Å: Chain M: D.127, E.130 Chain Q: D.127, E.130 Chain U: D.127, E.130 Ligands: CA.84, CA.104 5 PLIP interactions: 2 interactions with chain M, 2 interactions with chain U, 1 interactions with chain Q Metal complexes: M:D.127, M:E.130, U:D.127, U:E.130, Q:D.127 CA.65: 2 residues within 4Å: Chain F: Q.82 Chain M: D.80 2 PLIP interactions: 1 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:D.80, H2O.46 CA.67: 11 residues within 4Å: Chain J: L.165, H.169 Chain L: L.165, H.169 Chain N: L.165, H.169 Chain P: L.165, H.169 Ligands: CA.47, CA.57, CA.77 No protein-ligand interaction detected (PLIP) CA.68: 3 residues within 4Å: Chain N: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain N, 4 Ligand-Water interactions Metal complexes: N:E.57, H2O.47, H2O.48, H2O.48, H2O.50 CA.69: 8 residues within 4Å: Chain N: D.127, E.130 Chain S: D.127, E.130 Chain X: D.127, E.130 Ligands: CA.94, CA.119 5 PLIP interactions: 2 interactions with chain X, 2 interactions with chain N, 1 interactions with chain S Metal complexes: X:D.127, X:E.130, N:D.127, N:E.130, S:D.127 CA.70: 2 residues within 4Å: Chain H: Q.82 Chain N: D.80 2 PLIP interactions: 1 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:D.80, H2O.49 CA.72: 11 residues within 4Å: Chain I: L.165, H.169 Chain K: L.165, H.169 Chain M: L.165, H.169 Chain O: L.165, H.169 Ligands: CA.42, CA.52, CA.62 No protein-ligand interaction detected (PLIP) CA.73: 3 residues within 4Å: Chain O: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain O, 4 Ligand-Water interactions Metal complexes: O:E.57, H2O.51, H2O.51, H2O.51, H2O.54 CA.74: 8 residues within 4Å: Chain O: D.127, E.130 Chain T: D.127, E.130 Chain V: D.127, E.130 Ligands: CA.99, CA.109 5 PLIP interactions: 2 interactions with chain V, 2 interactions with chain O, 1 interactions with chain T Metal complexes: V:D.127, V:E.130, O:D.127, O:E.130, T:D.127 CA.75: 2 residues within 4Å: Chain E: Q.82 Chain O: D.80 2 PLIP interactions: 1 interactions with chain O, 1 Ligand-Water interactions Metal complexes: O:D.80, H2O.53 CA.77: 11 residues within 4Å: Chain J: L.165, H.169 Chain L: L.165, H.169 Chain N: L.165, H.169 Chain P: L.165, H.169 Ligands: CA.47, CA.57, CA.67 No protein-ligand interaction detected (PLIP) CA.78: 3 residues within 4Å: Chain P: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain P, 4 Ligand-Water interactions Metal complexes: P:E.57, H2O.54, H2O.55, H2O.55, H2O.58 CA.79: 8 residues within 4Å: Chain P: D.127, E.130 Chain R: D.127, E.130 Chain W: D.127, E.130 Ligands: CA.89, CA.114 5 PLIP interactions: 2 interactions with chain W, 2 interactions with chain P, 1 interactions with chain R Metal complexes: W:D.127, W:E.130, P:D.127, P:E.130, R:D.127 CA.80: 2 residues within 4Å: Chain G: Q.82 Chain P: D.80 2 PLIP interactions: 1 interactions with chain P, 1 Ligand-Water interactions Metal complexes: P:D.80, H2O.56 CA.82: 11 residues within 4Å: Chain F: L.165, H.169 Chain H: L.165, H.169 Chain Q: L.165, H.169 Chain S: L.165, H.169 Ligands: CA.27, CA.37, CA.92 No protein-ligand interaction detected (PLIP) CA.83: 3 residues within 4Å: Chain Q: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain Q, 4 Ligand-Water interactions Metal complexes: Q:E.57, H2O.58, H2O.58, H2O.59, H2O.61 CA.84: 8 residues within 4Å: Chain M: D.127, E.130 Chain Q: D.127, E.130 Chain U: D.127, E.130 Ligands: CA.64, CA.104 5 PLIP interactions: 2 interactions with chain Q, 2 interactions with chain M, 1 interactions with chain U Metal complexes: Q:D.127, Q:E.130, M:D.127, M:E.130, U:D.127 CA.85: 2 residues within 4Å: Chain C: Q.82 Chain Q: D.80 2 PLIP interactions: 1 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: Q:D.80, H2O.60 CA.87: 11 residues within 4Å: Chain E: L.165, H.169 Chain G: L.165, H.169 Chain R: L.165, H.169 Chain T: L.165, H.169 Ligands: CA.22, CA.32, CA.97 No protein-ligand interaction detected (PLIP) CA.88: 3 residues within 4Å: Chain R: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain R, 4 Ligand-Water interactions Metal complexes: R:E.57, H2O.61, H2O.62, H2O.62, H2O.65 CA.89: 8 residues within 4Å: Chain P: D.127, E.130 Chain R: D.127, E.130 Chain W: D.127, E.130 Ligands: CA.79, CA.114 5 PLIP interactions: 1 interactions with chain W, 2 interactions with chain R, 2 interactions with chain P Metal complexes: W:D.127, R:D.127, R:E.130, P:D.127, P:E.130 CA.90: 2 residues within 4Å: Chain A: Q.82 Chain R: D.80 2 PLIP interactions: 1 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:D.80, H2O.63 CA.92: 11 residues within 4Å: Chain F: L.165, H.169 Chain H: L.165, H.169 Chain Q: L.165, H.169 Chain S: L.165, H.169 Ligands: CA.27, CA.37, CA.82 No protein-ligand interaction detected (PLIP) CA.93: 3 residues within 4Å: Chain S: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain S, 4 Ligand-Water interactions Metal complexes: S:E.57, H2O.65, H2O.65, H2O.66, H2O.68 CA.94: 8 residues within 4Å: Chain N: D.127, E.130 Chain S: D.127, E.130 Chain X: D.127, E.130 Ligands: CA.69, CA.119 5 PLIP interactions: 2 interactions with chain S, 2 interactions with chain N, 1 interactions with chain X Metal complexes: S:D.127, S:E.130, N:D.127, N:E.130, X:D.127 CA.95: 2 residues within 4Å: Chain D: Q.82 Chain S: D.80 2 PLIP interactions: 1 interactions with chain S, 1 Ligand-Water interactions Metal complexes: S:D.80, H2O.67 CA.97: 11 residues within 4Å: Chain E: L.165, H.169 Chain G: L.165, H.169 Chain R: L.165, H.169 Chain T: L.165, H.169 Ligands: CA.22, CA.32, CA.87 No protein-ligand interaction detected (PLIP) CA.98: 3 residues within 4Å: Chain T: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain T, 4 Ligand-Water interactions Metal complexes: T:E.57, H2O.69, H2O.69, H2O.69, H2O.72 CA.99: 8 residues within 4Å: Chain O: D.127, E.130 Chain T: D.127, E.130 Chain V: D.127, E.130 Ligands: CA.74, CA.109 5 PLIP interactions: 2 interactions with chain T, 1 interactions with chain V, 2 interactions with chain O Metal complexes: T:D.127, T:E.130, V:D.127, O:D.127, O:E.130 CA.100: 2 residues within 4Å: Chain B: Q.82 Chain T: D.80 2 PLIP interactions: 1 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:D.80, H2O.71 CA.102: 11 residues within 4Å: Chain A: L.165, H.169 Chain C: L.165, H.169 Chain U: L.165, H.169 Chain W: L.165, H.169 Ligands: CA.2, CA.12, CA.112 No protein-ligand interaction detected (PLIP) CA.103: 3 residues within 4Å: Chain U: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain U, 4 Ligand-Water interactions Metal complexes: U:E.57, H2O.72, H2O.73, H2O.73, H2O.75 CA.104: 8 residues within 4Å: Chain M: D.127, E.130 Chain Q: D.127, E.130 Chain U: D.127, E.130 Ligands: CA.64, CA.84 5 PLIP interactions: 1 interactions with chain M, 2 interactions with chain Q, 2 interactions with chain U Metal complexes: M:D.127, Q:D.127, Q:E.130, U:D.127, U:E.130 CA.105: 2 residues within 4Å: Chain I: Q.82 Chain U: D.80 2 PLIP interactions: 1 interactions with chain U, 1 Ligand-Water interactions Metal complexes: U:D.80, H2O.74 CA.107: 11 residues within 4Å: Chain B: L.165, H.169 Chain D: L.165, H.169 Chain V: L.165, H.169 Chain X: L.165, H.169 Ligands: CA.7, CA.17, CA.117 No protein-ligand interaction detected (PLIP) CA.108: 3 residues within 4Å: Chain V: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain V, 4 Ligand-Water interactions Metal complexes: V:E.57, H2O.76, H2O.76, H2O.76, H2O.79 CA.109: 8 residues within 4Å: Chain O: D.127, E.130 Chain T: D.127, E.130 Chain V: D.127, E.130 Ligands: CA.74, CA.99 5 PLIP interactions: 2 interactions with chain V, 1 interactions with chain O, 2 interactions with chain T Metal complexes: V:D.127, V:E.130, O:D.127, T:D.127, T:E.130 CA.110: 2 residues within 4Å: Chain K: Q.82 Chain V: D.80 2 PLIP interactions: 1 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:D.80, H2O.78 CA.112: 11 residues within 4Å: Chain A: L.165, H.169 Chain C: L.165, H.169 Chain U: L.165, H.169 Chain W: L.165, H.169 Ligands: CA.2, CA.12, CA.102 No protein-ligand interaction detected (PLIP) CA.113: 3 residues within 4Å: Chain W: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain W, 4 Ligand-Water interactions Metal complexes: W:E.57, H2O.79, H2O.80, H2O.80, H2O.83 CA.114: 8 residues within 4Å: Chain P: D.127, E.130 Chain R: D.127, E.130 Chain W: D.127, E.130 Ligands: CA.79, CA.89 5 PLIP interactions: 2 interactions with chain W, 2 interactions with chain R, 1 interactions with chain P Metal complexes: W:D.127, W:E.130, R:D.127, R:E.130, P:D.127 CA.115: 2 residues within 4Å: Chain J: Q.82 Chain W: D.80 2 PLIP interactions: 1 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:D.80, H2O.81 CA.117: 11 residues within 4Å: Chain B: L.165, H.169 Chain D: L.165, H.169 Chain V: L.165, H.169 Chain X: L.165, H.169 Ligands: CA.7, CA.17, CA.107 No protein-ligand interaction detected (PLIP) CA.118: 3 residues within 4Å: Chain X: Q.54, E.57, E.58 5 PLIP interactions: 1 interactions with chain X, 4 Ligand-Water interactions Metal complexes: X:E.57, H2O.83, H2O.83, H2O.84, H2O.86 CA.119: 8 residues within 4Å: Chain N: D.127, E.130 Chain S: D.127, E.130 Chain X: D.127, E.130 Ligands: CA.69, CA.94 5 PLIP interactions: 2 interactions with chain X, 2 interactions with chain S, 1 interactions with chain N Metal complexes: X:D.127, X:E.130, S:D.127, S:E.130, N:D.127 CA.120: 2 residues within 4Å: Chain L: Q.82 Chain X: D.80 2 PLIP interactions: 1 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:D.80, H2O.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huard, D.J. et al., Re-engineering protein interfaces yields copper-inducible ferritin cage assembly. Nat.Chem.Biol. (2013)

Release Date

2013-01-23

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Ferritin heavy chain

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