SMTL ID : 4dz0.1

Crystal structure of the Cu-adduct of human H-Ferritin variant MIC1 labeled with a dansyl fluorophore

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-24-mer

Ligands

24 x AEN: 5-(1-SULFONAPHTHYL)-ACETYLAMINO-ETHYLAMINE(Covalent)

AEN.1: 4 residues within 4Å: Chain A: C.49, H.52, H.53, H.56 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.56 Hydrogen bonds: A:H.52, A:H.53 pi-Cation interactions: A:H.53 AEN.8: 4 residues within 4Å: Chain B: C.49, H.52, H.53, H.56 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:H.56 Hydrogen bonds: B:H.52, B:H.53 pi-Cation interactions: B:H.53 AEN.15: 4 residues within 4Å: Chain C: C.49, H.52, H.53, H.56 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:H.56 pi-Cation interactions: C:H.53 AEN.22: 4 residues within 4Å: Chain D: C.49, H.52, H.53, H.56 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:H.56 pi-Cation interactions: D:H.53 AEN.29: 4 residues within 4Å: Chain E: C.49, H.52, H.53, H.56 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:H.56 pi-Cation interactions: E:H.53 AEN.36: 4 residues within 4Å: Chain F: C.49, H.52, H.53, H.56 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:H.56 Hydrogen bonds: F:H.52, F:H.53 pi-Cation interactions: F:H.53 AEN.43: 4 residues within 4Å: Chain G: C.49, H.52, H.53, H.56 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:H.56 pi-Cation interactions: G:H.53 AEN.50: 4 residues within 4Å: Chain H: C.49, H.52, H.53, H.56 4 PLIP interactions: 4 interactions with chain H Hydrophobic interactions: H:H.56 Hydrogen bonds: H:H.52, H:H.53 pi-Cation interactions: H:H.53 AEN.57: 4 residues within 4Å: Chain I: C.49, H.52, H.53, H.56 3 PLIP interactions: 3 interactions with chain I Hydrophobic interactions: I:H.56 Hydrogen bonds: I:H.53 pi-Cation interactions: I:H.53 AEN.64: 4 residues within 4Å: Chain J: C.49, H.52, H.53, H.56 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:H.56 Hydrogen bonds: J:H.52 pi-Cation interactions: J:H.53 AEN.71: 4 residues within 4Å: Chain K: C.49, H.52, H.53, H.56 3 PLIP interactions: 3 interactions with chain K Hydrophobic interactions: K:H.56 Hydrogen bonds: K:H.52 pi-Cation interactions: K:H.53 AEN.78: 4 residues within 4Å: Chain L: C.49, H.52, H.53, H.56 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:H.56 Hydrogen bonds: L:H.53 pi-Cation interactions: L:H.53 AEN.85: 4 residues within 4Å: Chain M: C.49, H.52, H.53, H.56 2 PLIP interactions: 2 interactions with chain M Hydrophobic interactions: M:H.56 pi-Cation interactions: M:H.53 AEN.92: 4 residues within 4Å: Chain N: C.49, H.52, H.53, H.56 2 PLIP interactions: 2 interactions with chain N Hydrophobic interactions: N:H.56 pi-Cation interactions: N:H.53 AEN.99: 4 residues within 4Å: Chain O: C.49, H.52, H.53, H.56 4 PLIP interactions: 4 interactions with chain O Hydrophobic interactions: O:H.56 Hydrogen bonds: O:H.52, O:H.53 pi-Cation interactions: O:H.53 AEN.106: 4 residues within 4Å: Chain P: C.49, H.52, H.53, H.56 4 PLIP interactions: 4 interactions with chain P Hydrophobic interactions: P:H.56 Hydrogen bonds: P:H.52, P:H.53 pi-Cation interactions: P:H.53 AEN.113: 4 residues within 4Å: Chain Q: C.49, H.52, H.53, H.56 4 PLIP interactions: 4 interactions with chain Q Hydrophobic interactions: Q:H.56 Hydrogen bonds: Q:H.52, Q:H.53 pi-Cation interactions: Q:H.53 AEN.120: 4 residues within 4Å: Chain R: C.49, H.52, H.53, H.56 2 PLIP interactions: 2 interactions with chain R Hydrophobic interactions: R:H.56 pi-Cation interactions: R:H.53 AEN.127: 4 residues within 4Å: Chain S: C.49, H.52, H.53, H.56 4 PLIP interactions: 4 interactions with chain S Hydrophobic interactions: S:H.56 Hydrogen bonds: S:H.52, S:H.53 pi-Cation interactions: S:H.53 AEN.134: 4 residues within 4Å: Chain T: C.49, H.52, H.53, H.56 2 PLIP interactions: 2 interactions with chain T Hydrophobic interactions: T:H.56 pi-Cation interactions: T:H.53 AEN.141: 4 residues within 4Å: Chain U: C.49, H.52, H.53, H.56 3 PLIP interactions: 3 interactions with chain U Hydrophobic interactions: U:H.56 Hydrogen bonds: U:H.52 pi-Cation interactions: U:H.53 AEN.148: 4 residues within 4Å: Chain V: C.49, H.52, H.53, H.56 3 PLIP interactions: 3 interactions with chain V Hydrophobic interactions: V:H.56 Hydrogen bonds: V:H.53 pi-Cation interactions: V:H.53 AEN.155: 4 residues within 4Å: Chain W: C.49, H.52, H.53, H.56 3 PLIP interactions: 3 interactions with chain W Hydrophobic interactions: W:H.56 Hydrogen bonds: W:H.53 pi-Cation interactions: W:H.53 AEN.162: 4 residues within 4Å: Chain X: C.49, H.52, H.53, H.56 3 PLIP interactions: 3 interactions with chain X Hydrophobic interactions: X:H.56 Hydrogen bonds: X:H.52 pi-Cation interactions: X:H.53

72 x CU: COPPER (II) ION(Non-covalent)

CU.2: 4 residues within 4Å: Chain A: H.52, H.56 Chain M: H.59, H.63 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain M Metal complexes: A:H.52, A:H.56, M:H.59, M:H.63 CU.3: 3 residues within 4Å: Chain A: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.23, A:E.58, A:H.61 CU.4: 7 residues within 4Å: Chain A: H.169 Chain C: H.169 Chain U: H.169 Chain W: H.169 Ligands: CU.18, CU.144, CU.158 4 PLIP interactions: 1 interactions with chain W, 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain U Metal complexes: W:H.169, C:H.169, A:H.169, U:H.169 CU.9: 4 residues within 4Å: Chain B: H.52, H.56 Chain N: H.59, H.63 4 PLIP interactions: 2 interactions with chain N, 2 interactions with chain B Metal complexes: N:H.59, N:H.63, B:H.52, B:H.56 CU.10: 3 residues within 4Å: Chain B: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.23, B:E.58, B:H.61 CU.11: 7 residues within 4Å: Chain B: H.169 Chain D: H.169 Chain V: H.169 Chain X: H.169 Ligands: CU.25, CU.151, CU.165 4 PLIP interactions: 1 interactions with chain D, 1 interactions with chain V, 1 interactions with chain B, 1 interactions with chain X Metal complexes: D:H.169, V:H.169, B:H.169, X:H.169 CU.16: 4 residues within 4Å: Chain C: H.52, H.56 Chain P: H.59, H.63 4 PLIP interactions: 2 interactions with chain P, 2 interactions with chain C Metal complexes: P:H.59, P:H.63, C:H.52, C:H.56 CU.17: 3 residues within 4Å: Chain C: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.23, C:E.58, C:H.61 CU.18: 7 residues within 4Å: Chain A: H.169 Chain C: H.169 Chain U: H.169 Chain W: H.169 Ligands: CU.4, CU.144, CU.158 4 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain W, 1 interactions with chain U Metal complexes: C:H.169, A:H.169, W:H.169, U:H.169 CU.23: 4 residues within 4Å: Chain D: H.52, H.56 Chain O: H.59, H.63 4 PLIP interactions: 2 interactions with chain O, 2 interactions with chain D Metal complexes: O:H.59, O:H.63, D:H.52, D:H.56 CU.24: 3 residues within 4Å: Chain D: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.23, D:E.58, D:H.61 CU.25: 7 residues within 4Å: Chain B: H.169 Chain D: H.169 Chain V: H.169 Chain X: H.169 Ligands: CU.11, CU.151, CU.165 4 PLIP interactions: 1 interactions with chain X, 1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain V Metal complexes: X:H.169, B:H.169, D:H.169, V:H.169 CU.30: 4 residues within 4Å: Chain E: H.52, H.56 Chain W: H.59, H.63 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain W Metal complexes: E:H.52, E:H.56, W:H.59, W:H.63 CU.31: 3 residues within 4Å: Chain E: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.23, E:E.58, E:H.61 CU.32: 7 residues within 4Å: Chain E: H.169 Chain G: H.169 Chain R: H.169 Chain T: H.169 Ligands: CU.46, CU.123, CU.137 4 PLIP interactions: 1 interactions with chain E, 1 interactions with chain R, 1 interactions with chain T, 1 interactions with chain G Metal complexes: E:H.169, R:H.169, T:H.169, G:H.169 CU.37: 4 residues within 4Å: Chain F: H.52, H.56 Chain X: H.59, H.63 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain X Metal complexes: F:H.52, F:H.56, X:H.59, X:H.63 CU.38: 3 residues within 4Å: Chain F: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.23, F:E.58, F:H.61 CU.39: 7 residues within 4Å: Chain F: H.169 Chain H: H.169 Chain Q: H.169 Chain S: H.169 Ligands: CU.53, CU.116, CU.130 4 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain S, 1 interactions with chain F, 1 interactions with chain H Metal complexes: Q:H.169, S:H.169, F:H.169, H:H.169 CU.44: 4 residues within 4Å: Chain G: H.52, H.56 Chain V: H.59, H.63 4 PLIP interactions: 2 interactions with chain V, 2 interactions with chain G Metal complexes: V:H.59, V:H.63, G:H.52, G:H.56 CU.45: 3 residues within 4Å: Chain G: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.23, G:E.58, G:H.61 CU.46: 7 residues within 4Å: Chain E: H.169 Chain G: H.169 Chain R: H.169 Chain T: H.169 Ligands: CU.32, CU.123, CU.137 4 PLIP interactions: 1 interactions with chain R, 1 interactions with chain G, 1 interactions with chain E, 1 interactions with chain T Metal complexes: R:H.169, G:H.169, E:H.169, T:H.169 CU.51: 4 residues within 4Å: Chain H: H.52, H.56 Chain U: H.59, H.63 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain U Metal complexes: H:H.52, H:H.56, U:H.59, U:H.63 CU.52: 3 residues within 4Å: Chain H: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.23, H:E.58, H:H.61 CU.53: 7 residues within 4Å: Chain F: H.169 Chain H: H.169 Chain Q: H.169 Chain S: H.169 Ligands: CU.39, CU.116, CU.130 4 PLIP interactions: 1 interactions with chain F, 1 interactions with chain H, 1 interactions with chain S, 1 interactions with chain Q Metal complexes: F:H.169, H:H.169, S:H.169, Q:H.169 CU.58: 4 residues within 4Å: Chain I: H.52, H.56 Chain T: H.59, H.63 4 PLIP interactions: 2 interactions with chain T, 2 interactions with chain I Metal complexes: T:H.59, T:H.63, I:H.52, I:H.56 CU.59: 3 residues within 4Å: Chain I: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.23, I:E.58, I:H.61 CU.60: 7 residues within 4Å: Chain I: H.169 Chain K: H.169 Chain M: H.169 Chain O: H.169 Ligands: CU.74, CU.88, CU.102 4 PLIP interactions: 1 interactions with chain K, 1 interactions with chain M, 1 interactions with chain I, 1 interactions with chain O Metal complexes: K:H.169, M:H.169, I:H.169, O:H.169 CU.65: 4 residues within 4Å: Chain J: H.52, H.56 Chain S: H.59, H.63 4 PLIP interactions: 2 interactions with chain S, 2 interactions with chain J Metal complexes: S:H.59, S:H.63, J:H.52, J:H.56 CU.66: 3 residues within 4Å: Chain J: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:E.23, J:E.58, J:H.61 CU.67: 7 residues within 4Å: Chain J: H.169 Chain L: H.169 Chain N: H.169 Chain P: H.169 Ligands: CU.81, CU.95, CU.109 4 PLIP interactions: 1 interactions with chain L, 1 interactions with chain N, 1 interactions with chain P, 1 interactions with chain J Metal complexes: L:H.169, N:H.169, P:H.169, J:H.169 CU.72: 4 residues within 4Å: Chain K: H.52, H.56 Chain Q: H.59, H.63 4 PLIP interactions: 2 interactions with chain Q, 2 interactions with chain K Metal complexes: Q:H.59, Q:H.63, K:H.52, K:H.56 CU.73: 3 residues within 4Å: Chain K: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:E.23, K:E.58, K:H.61 CU.74: 7 residues within 4Å: Chain I: H.169 Chain K: H.169 Chain M: H.169 Chain O: H.169 Ligands: CU.60, CU.88, CU.102 4 PLIP interactions: 1 interactions with chain O, 1 interactions with chain K, 1 interactions with chain M, 1 interactions with chain I Metal complexes: O:H.169, K:H.169, M:H.169, I:H.169 CU.79: 4 residues within 4Å: Chain L: H.52, H.56 Chain R: H.59, H.63 4 PLIP interactions: 2 interactions with chain R, 2 interactions with chain L Metal complexes: R:H.59, R:H.63, L:H.52, L:H.56 CU.80: 3 residues within 4Å: Chain L: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:E.23, L:E.58, L:H.61 CU.81: 7 residues within 4Å: Chain J: H.169 Chain L: H.169 Chain N: H.169 Chain P: H.169 Ligands: CU.67, CU.95, CU.109 4 PLIP interactions: 1 interactions with chain L, 1 interactions with chain J, 1 interactions with chain P, 1 interactions with chain N Metal complexes: L:H.169, J:H.169, P:H.169, N:H.169 CU.86: 4 residues within 4Å: Chain A: H.59, H.63 Chain M: H.52, H.56 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain M Metal complexes: A:H.59, A:H.63, M:H.52, M:H.56 CU.87: 3 residues within 4Å: Chain M: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:E.23, M:E.58, M:H.61 CU.88: 7 residues within 4Å: Chain I: H.169 Chain K: H.169 Chain M: H.169 Chain O: H.169 Ligands: CU.60, CU.74, CU.102 4 PLIP interactions: 1 interactions with chain K, 1 interactions with chain O, 1 interactions with chain I, 1 interactions with chain M Metal complexes: K:H.169, O:H.169, I:H.169, M:H.169 CU.93: 4 residues within 4Å: Chain B: H.59, H.63 Chain N: H.52, H.56 4 PLIP interactions: 2 interactions with chain N, 2 interactions with chain B Metal complexes: N:H.52, N:H.56, B:H.59, B:H.63 CU.94: 3 residues within 4Å: Chain N: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:E.23, N:E.58, N:H.61 CU.95: 7 residues within 4Å: Chain J: H.169 Chain L: H.169 Chain N: H.169 Chain P: H.169 Ligands: CU.67, CU.81, CU.109 4 PLIP interactions: 1 interactions with chain L, 1 interactions with chain N, 1 interactions with chain P, 1 interactions with chain J Metal complexes: L:H.169, N:H.169, P:H.169, J:H.169 CU.100: 4 residues within 4Å: Chain D: H.59, H.63 Chain O: H.52, H.56 4 PLIP interactions: 2 interactions with chain O, 2 interactions with chain D Metal complexes: O:H.52, O:H.56, D:H.59, D:H.63 CU.101: 3 residues within 4Å: Chain O: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain O Metal complexes: O:E.23, O:E.58, O:H.61 CU.102: 7 residues within 4Å: Chain I: H.169 Chain K: H.169 Chain M: H.169 Chain O: H.169 Ligands: CU.60, CU.74, CU.88 4 PLIP interactions: 1 interactions with chain M, 1 interactions with chain K, 1 interactions with chain I, 1 interactions with chain O Metal complexes: M:H.169, K:H.169, I:H.169, O:H.169 CU.107: 4 residues within 4Å: Chain C: H.59, H.63 Chain P: H.52, H.56 4 PLIP interactions: 2 interactions with chain P, 2 interactions with chain C Metal complexes: P:H.52, P:H.56, C:H.59, C:H.63 CU.108: 3 residues within 4Å: Chain P: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain P Metal complexes: P:E.23, P:E.58, P:H.61 CU.109: 7 residues within 4Å: Chain J: H.169 Chain L: H.169 Chain N: H.169 Chain P: H.169 Ligands: CU.67, CU.81, CU.95 4 PLIP interactions: 1 interactions with chain P, 1 interactions with chain J, 1 interactions with chain L, 1 interactions with chain N Metal complexes: P:H.169, J:H.169, L:H.169, N:H.169 CU.114: 4 residues within 4Å: Chain K: H.59, H.63 Chain Q: H.52, H.56 4 PLIP interactions: 2 interactions with chain K, 2 interactions with chain Q Metal complexes: K:H.59, K:H.63, Q:H.52, Q:H.56 CU.115: 3 residues within 4Å: Chain Q: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:E.23, Q:E.58, Q:H.61 CU.116: 7 residues within 4Å: Chain F: H.169 Chain H: H.169 Chain Q: H.169 Chain S: H.169 Ligands: CU.39, CU.53, CU.130 4 PLIP interactions: 1 interactions with chain F, 1 interactions with chain Q, 1 interactions with chain H, 1 interactions with chain S Metal complexes: F:H.169, Q:H.169, H:H.169, S:H.169 CU.121: 4 residues within 4Å: Chain L: H.59, H.63 Chain R: H.52, H.56 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain R Metal complexes: L:H.59, L:H.63, R:H.52, R:H.56 CU.122: 3 residues within 4Å: Chain R: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:E.23, R:E.58, R:H.61 CU.123: 7 residues within 4Å: Chain E: H.169 Chain G: H.169 Chain R: H.169 Chain T: H.169 Ligands: CU.32, CU.46, CU.137 4 PLIP interactions: 1 interactions with chain G, 1 interactions with chain R, 1 interactions with chain T, 1 interactions with chain E Metal complexes: G:H.169, R:H.169, T:H.169, E:H.169 CU.128: 4 residues within 4Å: Chain J: H.59, H.63 Chain S: H.52, H.56 4 PLIP interactions: 2 interactions with chain J, 2 interactions with chain S Metal complexes: J:H.59, J:H.63, S:H.52, S:H.56 CU.129: 3 residues within 4Å: Chain S: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:E.23, S:E.58, S:H.61 CU.130: 7 residues within 4Å: Chain F: H.169 Chain H: H.169 Chain Q: H.169 Chain S: H.169 Ligands: CU.39, CU.53, CU.116 4 PLIP interactions: 1 interactions with chain Q, 1 interactions with chain F, 1 interactions with chain H, 1 interactions with chain S Metal complexes: Q:H.169, F:H.169, H:H.169, S:H.169 CU.135: 4 residues within 4Å: Chain I: H.59, H.63 Chain T: H.52, H.56 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain T Metal complexes: I:H.59, I:H.63, T:H.52, T:H.56 CU.136: 3 residues within 4Å: Chain T: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain T Metal complexes: T:E.23, T:E.58, T:H.61 CU.137: 7 residues within 4Å: Chain E: H.169 Chain G: H.169 Chain R: H.169 Chain T: H.169 Ligands: CU.32, CU.46, CU.123 4 PLIP interactions: 1 interactions with chain G, 1 interactions with chain T, 1 interactions with chain R, 1 interactions with chain E Metal complexes: G:H.169, T:H.169, R:H.169, E:H.169 CU.142: 4 residues within 4Å: Chain H: H.59, H.63 Chain U: H.52, H.56 4 PLIP interactions: 2 interactions with chain H, 2 interactions with chain U Metal complexes: H:H.59, H:H.63, U:H.52, U:H.56 CU.143: 3 residues within 4Å: Chain U: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:E.23, U:E.58, U:H.61 CU.144: 7 residues within 4Å: Chain A: H.169 Chain C: H.169 Chain U: H.169 Chain W: H.169 Ligands: CU.4, CU.18, CU.158 4 PLIP interactions: 1 interactions with chain U, 1 interactions with chain C, 1 interactions with chain W, 1 interactions with chain A Metal complexes: U:H.169, C:H.169, W:H.169, A:H.169 CU.149: 4 residues within 4Å: Chain G: H.59, H.63 Chain V: H.52, H.56 4 PLIP interactions: 2 interactions with chain V, 2 interactions with chain G Metal complexes: V:H.52, V:H.56, G:H.59, G:H.63 CU.150: 3 residues within 4Å: Chain V: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain V Metal complexes: V:E.23, V:E.58, V:H.61 CU.151: 7 residues within 4Å: Chain B: H.169 Chain D: H.169 Chain V: H.169 Chain X: H.169 Ligands: CU.11, CU.25, CU.165 4 PLIP interactions: 1 interactions with chain X, 1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain V Metal complexes: X:H.169, B:H.169, D:H.169, V:H.169 CU.156: 4 residues within 4Å: Chain E: H.59, H.63 Chain W: H.52, H.56 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain W Metal complexes: E:H.59, E:H.63, W:H.52, W:H.56 CU.157: 3 residues within 4Å: Chain W: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain W Metal complexes: W:E.23, W:E.58, W:H.61 CU.158: 7 residues within 4Å: Chain A: H.169 Chain C: H.169 Chain U: H.169 Chain W: H.169 Ligands: CU.4, CU.18, CU.144 4 PLIP interactions: 1 interactions with chain W, 1 interactions with chain A, 1 interactions with chain U, 1 interactions with chain C Metal complexes: W:H.169, A:H.169, U:H.169, C:H.169 CU.163: 4 residues within 4Å: Chain F: H.59, H.63 Chain X: H.52, H.56 4 PLIP interactions: 2 interactions with chain F, 2 interactions with chain X Metal complexes: F:H.59, F:H.63, X:H.52, X:H.56 CU.164: 3 residues within 4Å: Chain X: E.23, E.58, H.61 3 PLIP interactions: 3 interactions with chain X Metal complexes: X:E.23, X:E.58, X:H.61 CU.165: 7 residues within 4Å: Chain B: H.169 Chain D: H.169 Chain V: H.169 Chain X: H.169 Ligands: CU.11, CU.25, CU.151 4 PLIP interactions: 1 interactions with chain X, 1 interactions with chain B, 1 interactions with chain D, 1 interactions with chain V Metal complexes: X:H.169, B:H.169, D:H.169, V:H.169

72 x CA: CALCIUM ION(Non-covalent)

CA.5: 8 residues within 4Å: Chain A: D.127, E.130 Chain H: D.127, E.130 Chain K: D.127, E.130 Ligands: CA.54, CA.75 5 PLIP interactions: 1 interactions with chain H, 2 interactions with chain A, 2 interactions with chain K Metal complexes: H:D.127, A:D.127, A:E.130, K:D.127, K:E.130 CA.6: 2 residues within 4Å: Chain A: D.80 Chain M: Q.82 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.80 CA.7: 4 residues within 4Å: Chain A: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.57, A:E.58, H2O.1, H2O.1 CA.12: 8 residues within 4Å: Chain B: D.127, E.130 Chain F: D.127, E.130 Chain J: D.127, E.130 Ligands: CA.40, CA.68 5 PLIP interactions: 1 interactions with chain F, 2 interactions with chain J, 2 interactions with chain B Metal complexes: F:D.127, J:D.127, J:E.130, B:D.127, B:E.130 CA.13: 2 residues within 4Å: Chain B: D.80 Chain N: Q.82 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.80 CA.14: 4 residues within 4Å: Chain B: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.57, B:E.58, H2O.3, H2O.3 CA.19: 8 residues within 4Å: Chain C: D.127, E.130 Chain E: D.127, E.130 Chain L: D.127, E.130 Ligands: CA.33, CA.82 5 PLIP interactions: 2 interactions with chain L, 2 interactions with chain C, 1 interactions with chain E Metal complexes: L:D.127, L:E.130, C:D.127, C:E.130, E:D.127 CA.20: 2 residues within 4Å: Chain C: D.80 Chain P: Q.82 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:D.80 CA.21: 4 residues within 4Å: Chain C: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.57, C:E.58, H2O.5, H2O.5 CA.26: 8 residues within 4Å: Chain D: D.127, E.130 Chain G: D.127, E.130 Chain I: D.127, E.130 Ligands: CA.47, CA.61 5 PLIP interactions: 2 interactions with chain I, 2 interactions with chain D, 1 interactions with chain G Metal complexes: I:D.127, I:E.130, D:D.127, D:E.130, G:D.127 CA.27: 2 residues within 4Å: Chain D: D.80 Chain O: Q.82 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.80 CA.28: 4 residues within 4Å: Chain D: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.57, D:E.58, H2O.7, H2O.7 CA.33: 8 residues within 4Å: Chain C: D.127, E.130 Chain E: D.127, E.130 Chain L: D.127, E.130 Ligands: CA.19, CA.82 5 PLIP interactions: 2 interactions with chain E, 2 interactions with chain C, 1 interactions with chain L Metal complexes: E:D.127, E:E.130, C:D.127, C:E.130, L:D.127 CA.34: 2 residues within 4Å: Chain E: D.80 Chain W: Q.82 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:D.80 CA.35: 4 residues within 4Å: Chain E: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.57, E:E.58, H2O.9, H2O.9 CA.40: 8 residues within 4Å: Chain B: D.127, E.130 Chain F: D.127, E.130 Chain J: D.127, E.130 Ligands: CA.12, CA.68 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain F, 1 interactions with chain J Metal complexes: B:D.127, B:E.130, F:D.127, F:E.130, J:D.127 CA.41: 2 residues within 4Å: Chain F: D.80 Chain X: Q.82 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:D.80 CA.42: 4 residues within 4Å: Chain F: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:E.57, F:E.58, H2O.10, H2O.11 CA.47: 8 residues within 4Å: Chain D: D.127, E.130 Chain G: D.127, E.130 Chain I: D.127, E.130 Ligands: CA.26, CA.61 5 PLIP interactions: 2 interactions with chain G, 2 interactions with chain D, 1 interactions with chain I Metal complexes: G:D.127, G:E.130, D:D.127, D:E.130, I:D.127 CA.48: 2 residues within 4Å: Chain G: D.80 Chain V: Q.82 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:D.80 CA.49: 4 residues within 4Å: Chain G: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:E.57, G:E.58, H2O.12, H2O.13 CA.54: 8 residues within 4Å: Chain A: D.127, E.130 Chain H: D.127, E.130 Chain K: D.127, E.130 Ligands: CA.5, CA.75 5 PLIP interactions: 2 interactions with chain H, 2 interactions with chain A, 1 interactions with chain K Metal complexes: H:D.127, H:E.130, A:D.127, A:E.130, K:D.127 CA.55: 2 residues within 4Å: Chain H: D.80 Chain U: Q.82 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:D.80 CA.56: 4 residues within 4Å: Chain H: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:E.57, H:E.58, H2O.14, H2O.15 CA.61: 8 residues within 4Å: Chain D: D.127, E.130 Chain G: D.127, E.130 Chain I: D.127, E.130 Ligands: CA.26, CA.47 5 PLIP interactions: 1 interactions with chain D, 2 interactions with chain I, 2 interactions with chain G Metal complexes: D:D.127, I:D.127, I:E.130, G:D.127, G:E.130 CA.62: 2 residues within 4Å: Chain I: D.80 Chain T: Q.82 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:D.80 CA.63: 4 residues within 4Å: Chain I: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:E.57, I:E.58, H2O.16, H2O.17 CA.68: 8 residues within 4Å: Chain B: D.127, E.130 Chain F: D.127, E.130 Chain J: D.127, E.130 Ligands: CA.12, CA.40 5 PLIP interactions: 2 interactions with chain J, 2 interactions with chain F, 1 interactions with chain B Metal complexes: J:D.127, J:E.130, F:D.127, F:E.130, B:D.127 CA.69: 2 residues within 4Å: Chain J: D.80 Chain S: Q.82 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:D.80 CA.70: 4 residues within 4Å: Chain J: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:E.57, J:E.58, H2O.18, H2O.19 CA.75: 8 residues within 4Å: Chain A: D.127, E.130 Chain H: D.127, E.130 Chain K: D.127, E.130 Ligands: CA.5, CA.54 5 PLIP interactions: 2 interactions with chain H, 1 interactions with chain A, 2 interactions with chain K Metal complexes: H:D.127, H:E.130, A:D.127, K:D.127, K:E.130 CA.76: 2 residues within 4Å: Chain K: D.80 Chain Q: Q.82 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:D.80 CA.77: 4 residues within 4Å: Chain K: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:E.57, K:E.58, H2O.20, H2O.21 CA.82: 8 residues within 4Å: Chain C: D.127, E.130 Chain E: D.127, E.130 Chain L: D.127, E.130 Ligands: CA.19, CA.33 5 PLIP interactions: 1 interactions with chain C, 2 interactions with chain L, 2 interactions with chain E Metal complexes: C:D.127, L:D.127, L:E.130, E:D.127, E:E.130 CA.83: 2 residues within 4Å: Chain L: D.80 Chain R: Q.82 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:D.80 CA.84: 4 residues within 4Å: Chain L: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:E.57, L:E.58, H2O.22, H2O.23 CA.89: 8 residues within 4Å: Chain M: D.127, E.130 Chain T: D.127, E.130 Chain W: D.127, E.130 Ligands: CA.138, CA.159 5 PLIP interactions: 1 interactions with chain T, 2 interactions with chain M, 2 interactions with chain W Metal complexes: T:D.127, M:D.127, M:E.130, W:D.127, W:E.130 CA.90: 2 residues within 4Å: Chain A: Q.82 Chain M: D.80 1 PLIP interactions: 1 interactions with chain M Metal complexes: M:D.80 CA.91: 4 residues within 4Å: Chain M: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:E.57, M:E.58, H2O.24, H2O.25 CA.96: 8 residues within 4Å: Chain N: D.127, E.130 Chain R: D.127, E.130 Chain V: D.127, E.130 Ligands: CA.124, CA.152 5 PLIP interactions: 2 interactions with chain V, 2 interactions with chain N, 1 interactions with chain R Metal complexes: V:D.127, V:E.130, N:D.127, N:E.130, R:D.127 CA.97: 2 residues within 4Å: Chain B: Q.82 Chain N: D.80 1 PLIP interactions: 1 interactions with chain N Metal complexes: N:D.80 CA.98: 4 residues within 4Å: Chain N: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:E.57, N:E.58, H2O.26, H2O.27 CA.103: 8 residues within 4Å: Chain O: D.127, E.130 Chain Q: D.127, E.130 Chain X: D.127, E.130 Ligands: CA.117, CA.166 5 PLIP interactions: 2 interactions with chain X, 1 interactions with chain Q, 2 interactions with chain O Metal complexes: X:D.127, X:E.130, Q:D.127, O:D.127, O:E.130 CA.104: 2 residues within 4Å: Chain D: Q.82 Chain O: D.80 1 PLIP interactions: 1 interactions with chain O Metal complexes: O:D.80 CA.105: 4 residues within 4Å: Chain O: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:E.57, O:E.58, H2O.28, H2O.29 CA.110: 8 residues within 4Å: Chain P: D.127, E.130 Chain S: D.127, E.130 Chain U: D.127, E.130 Ligands: CA.131, CA.145 5 PLIP interactions: 2 interactions with chain U, 2 interactions with chain P, 1 interactions with chain S Metal complexes: U:D.127, U:E.130, P:D.127, P:E.130, S:D.127 CA.111: 2 residues within 4Å: Chain C: Q.82 Chain P: D.80 1 PLIP interactions: 1 interactions with chain P Metal complexes: P:D.80 CA.112: 4 residues within 4Å: Chain P: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:E.57, P:E.58, H2O.30, H2O.31 CA.117: 8 residues within 4Å: Chain O: D.127, E.130 Chain Q: D.127, E.130 Chain X: D.127, E.130 Ligands: CA.103, CA.166 5 PLIP interactions: 2 interactions with chain Q, 2 interactions with chain O, 1 interactions with chain X Metal complexes: Q:D.127, Q:E.130, O:D.127, O:E.130, X:D.127 CA.118: 2 residues within 4Å: Chain K: Q.82 Chain Q: D.80 1 PLIP interactions: 1 interactions with chain Q Metal complexes: Q:D.80 CA.119: 4 residues within 4Å: Chain Q: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:E.57, Q:E.58, H2O.32, H2O.33 CA.124: 8 residues within 4Å: Chain N: D.127, E.130 Chain R: D.127, E.130 Chain V: D.127, E.130 Ligands: CA.96, CA.152 5 PLIP interactions: 2 interactions with chain N, 2 interactions with chain R, 1 interactions with chain V Metal complexes: N:D.127, N:E.130, R:D.127, R:E.130, V:D.127 CA.125: 2 residues within 4Å: Chain L: Q.82 Chain R: D.80 1 PLIP interactions: 1 interactions with chain R Metal complexes: R:D.80 CA.126: 4 residues within 4Å: Chain R: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:E.57, R:E.58, H2O.34, H2O.35 CA.131: 8 residues within 4Å: Chain P: D.127, E.130 Chain S: D.127, E.130 Chain U: D.127, E.130 Ligands: CA.110, CA.145 5 PLIP interactions: 2 interactions with chain S, 2 interactions with chain P, 1 interactions with chain U Metal complexes: S:D.127, S:E.130, P:D.127, P:E.130, U:D.127 CA.132: 2 residues within 4Å: Chain J: Q.82 Chain S: D.80 1 PLIP interactions: 1 interactions with chain S Metal complexes: S:D.80 CA.133: 4 residues within 4Å: Chain S: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:E.57, S:E.58, H2O.36, H2O.37 CA.138: 8 residues within 4Å: Chain M: D.127, E.130 Chain T: D.127, E.130 Chain W: D.127, E.130 Ligands: CA.89, CA.159 5 PLIP interactions: 1 interactions with chain W, 2 interactions with chain T, 2 interactions with chain M Metal complexes: W:D.127, T:D.127, T:E.130, M:D.127, M:E.130 CA.139: 2 residues within 4Å: Chain I: Q.82 Chain T: D.80 1 PLIP interactions: 1 interactions with chain T Metal complexes: T:D.80 CA.140: 4 residues within 4Å: Chain T: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:E.57, T:E.58, H2O.38, H2O.38 CA.145: 8 residues within 4Å: Chain P: D.127, E.130 Chain S: D.127, E.130 Chain U: D.127, E.130 Ligands: CA.110, CA.131 5 PLIP interactions: 2 interactions with chain U, 1 interactions with chain P, 2 interactions with chain S Metal complexes: U:D.127, U:E.130, P:D.127, S:D.127, S:E.130 CA.146: 2 residues within 4Å: Chain H: Q.82 Chain U: D.80 1 PLIP interactions: 1 interactions with chain U Metal complexes: U:D.80 CA.147: 4 residues within 4Å: Chain U: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:E.57, U:E.58, H2O.40, H2O.40 CA.152: 8 residues within 4Å: Chain N: D.127, E.130 Chain R: D.127, E.130 Chain V: D.127, E.130 Ligands: CA.96, CA.124 5 PLIP interactions: 2 interactions with chain R, 1 interactions with chain N, 2 interactions with chain V Metal complexes: R:D.127, R:E.130, N:D.127, V:D.127, V:E.130 CA.153: 2 residues within 4Å: Chain G: Q.82 Chain V: D.80 1 PLIP interactions: 1 interactions with chain V Metal complexes: V:D.80 CA.154: 4 residues within 4Å: Chain V: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:E.57, V:E.58, H2O.42, H2O.42 CA.159: 8 residues within 4Å: Chain M: D.127, E.130 Chain T: D.127, E.130 Chain W: D.127, E.130 Ligands: CA.89, CA.138 5 PLIP interactions: 2 interactions with chain T, 1 interactions with chain M, 2 interactions with chain W Metal complexes: T:D.127, T:E.130, M:D.127, W:D.127, W:E.130 CA.160: 2 residues within 4Å: Chain E: Q.82 Chain W: D.80 1 PLIP interactions: 1 interactions with chain W Metal complexes: W:D.80 CA.161: 4 residues within 4Å: Chain W: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:E.57, W:E.58, H2O.44, H2O.44 CA.166: 8 residues within 4Å: Chain O: D.127, E.130 Chain Q: D.127, E.130 Chain X: D.127, E.130 Ligands: CA.103, CA.117 5 PLIP interactions: 2 interactions with chain Q, 2 interactions with chain X, 1 interactions with chain O Metal complexes: Q:D.127, Q:E.130, X:D.127, X:E.130, O:D.127 CA.167: 2 residues within 4Å: Chain F: Q.82 Chain X: D.80 1 PLIP interactions: 1 interactions with chain X Metal complexes: X:D.80 CA.168: 4 residues within 4Å: Chain X: Q.54, E.57, E.58, E.103 4 PLIP interactions: 2 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:E.57, X:E.58, H2O.46, H2O.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huard, D.J. et al., Re-engineering protein interfaces yields copper-inducible ferritin cage assembly. Nat.Chem.Biol. (2013)

Release Date

2013-01-23

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

M
A

N
A

O
A

P
A

Q
A

R
A

S
A

T
A

U
A

V
A

W
A

X
A

Ferritin heavy chain