SMTL ID : 4dz2.2 (2 other biounits)

Crystal structure of a Peptidyl-prolyl cis-trans isomerase with surface mutation R92G from Burkholderia pseudomallei complexed with FK506

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x FK5: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN(Non-covalent)

FK5.1: 13 residues within 4Å: Chain A: Y.33, F.43, D.44, R.49, F.53, M.61, V.62, I.63, W.66, G.88, Y.89, I.98, F.106 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.33, A:F.53, A:F.53, A:F.53, A:F.53, A:V.62, A:I.63, A:W.66, A:W.66, A:Y.89, A:I.98 Hydrogen bonds: A:Y.33, A:D.44, A:I.63, A:Y.89 FK5.3: 13 residues within 4Å: Chain B: Y.33, F.43, D.44, R.49, F.53, M.61, V.62, I.63, W.66, G.88, Y.89, I.98, F.106 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:Y.33, B:F.53, B:F.53, B:F.53, B:F.53, B:V.62, B:I.63, B:W.66, B:W.66, B:Y.89, B:I.98 Hydrogen bonds: B:I.63, B:Y.89

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.112, V.113 Chain B: D.51, P.52 5 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:D.51, B:P.52, A:V.113, H2O.3, H2O.3 CA.4: 4 residues within 4Å: Chain A: D.51, P.52 Chain B: D.112, V.113 5 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: B:V.113, A:D.51, A:P.52, H2O.8, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Begley, D.W. et al., A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother. (2014)

Release Date

2012-03-28

Peptides

Peptidyl-prolyl cis-trans isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Peptidyl-prolyl cis-trans isomerase

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