SMTL ID : 4dz5.1

W227F active site mutant of AKR1C3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, Q.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280, F.306 Ligands: ACT.4 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:Y.216, A:F.306 Hydrogen bonds: A:T.23, A:Y.24, A:Y.24, A:D.50, A:D.50, A:S.166, A:N.167, A:Q.190, A:S.217, A:L.219, A:S.221, A:Q.222, A:Q.222, A:Q.222, A:K.270, A:S.271, A:Y.272, A:Q.279, A:N.280 Water bridges: A:S.217, A:A.218, A:A.218, A:Q.279 Salt bridges: A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: K.4, C.7, F.15, P.17, E.77, D.78, I.79, F.80 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.4, A:E.77 Water bridges: A:F.15 EDO.3: 9 residues within 4Å: Chain A: Q.6, P.17, V.18, L.19, G.45, F.46, R.47, H.48, F.284 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.6, A:V.18, A:L.19, A:R.47, A:H.48

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: Y.24, Y.55, H.117 Ligands: NAP.1, PG4.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.55 Hydrogen bonds: A:Y.55 Salt bridges: A:K.84, A:H.117

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 8 residues within 4Å: Chain A: W.86, M.120, N.167, Y.216, F.311, P.318, Y.319 Ligands: ACT.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Squire, C.J. et al., Validating PR-104A binding to AKR1C3. To be Published

Release Date

2013-03-06

Peptides

Aldo-keto reductase family 1 member C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member C3