SMTL ID : 4e2b.1

High resolution crystal structure of the old yellow enzyme from Trypanosoma cruzi

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 19 residues within 4Å: Chain A: A.28, P.29, L.30, T.31, A.64, Q.106, H.198, N.201, R.252, L.289, N.316, L.317, R.318, F.338, G.339, A.340, Y.366, Y.367 Ligands: GOL.7 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.30, A:Y.366, A:Y.366, A:Y.367 Hydrogen bonds: A:P.29, A:T.31, A:A.64, A:Q.106, A:Q.106, A:R.252, A:R.252, A:N.316, A:N.316, A:R.318, A:G.339, A:A.340 Water bridges: A:T.31, A:T.31, A:L.317, A:Y.319, A:K.341

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: E.165, L.166, T.167, R.216, Q.217, S.218 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.166, A:Q.217, A:S.218, A:S.218 Water bridges: A:E.165, A:D.168 GOL.3: 5 residues within 4Å: Chain A: R.22, N.23, S.56, V.349, Q.353 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.22 GOL.7: 4 residues within 4Å: Chain A: H.198, N.201, Y.203 Ligands: FMN.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.201

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 2 residues within 4Å: Chain A: R.362, E.364 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.362 PEG.5: 7 residues within 4Å: Chain A: K.49, D.53, N.375, D.376, Y.377, P.378, T.379 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.49 Water bridges: A:T.379, A:T.379 PEG.6: 3 residues within 4Å: Chain A: P.13, T.20, R.22 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murakami, M.T. et al., High resolution crystal structure and in solution studies of the old yellow enzyme from Trypanosoma cruzi: Insights into oligomerization, enzyme dynamics and specificity. To be Published

Release Date

2013-03-27

Peptides

Old Yellow Enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Old Yellow Enzyme

Related Entries With Identical Sequence