SMTL ID : 4e4h.1

Crystal structure of Histone Demethylase NO66

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-tetramer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 3 residues within 4Å: Chain A: H.162, D.164, H.227 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.162, A:D.164, A:H.227, H2O.6, H2O.6 FE.3: 3 residues within 4Å: Chain B: H.162, D.164, H.227 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.162, B:D.164, B:H.227, H2O.12, H2O.12 FE.4: 3 residues within 4Å: Chain C: H.162, D.164, H.227 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.162, C:D.164, C:H.227, H2O.18, H2O.18 FE.7: 3 residues within 4Å: Chain D: H.162, D.164, H.227 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.162, D:D.164, D:H.227, H2O.23

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 2 residues within 4Å: Chain A: A.362, D.450 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.450

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain B: L.276, F.280, M.281 Chain C: G.142, S.143, N.248, R.323, F.327 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:G.142, C:N.248, C:R.323, C:R.323, C:F.327 Water bridges: C:M.144

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 4 residues within 4Å: Chain B: Y.41 Chain C: P.277, R.278, D.279 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.278, C:R.278

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tao, Y. et al., tructural Basis for Tetramerization-dependent Gene Repression by Histone Demethylase NO66. To be Published

Release Date

2013-01-30

Peptides

Lysine-specific demethylase NO66: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Lysine-specific demethylase NO66