SMTL ID : 4e67.1

The structure of the polo-box domain (PBD) of polo-like kinase 1 (Plk1) in complex with hydrocinnamoyl-derivatized PLHSpTA peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x HCI- PRO- LEU- HIS- SER- TPO- ALA- NH2: hydrocinnamoyl-derivatized PLHSpTA peptide(Non-covalent)

HCI-PRO-LEU-HIS-SER-TPO-ALA-NH2.1: 15 residues within 4Å: Chain A: K.51, W.52, V.53, D.54, Y.55, D.57, Y.119, F.120, Y.123, H.127, L.128, L.129, R.154, H.176, K.178 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:W.52, A:V.53, A:D.54, A:Y.55, A:Y.119, A:F.120, A:Y.123 Hydrogen bonds: A:W.52, A:W.52, A:D.54, A:D.54, A:Y.123, A:H.127, A:L.129 Water bridges: A:S.50, A:L.129, A:N.171, A:N.171, A:N.171, A:K.178 Salt bridges: A:H.176, A:K.178 pi-Stacking: A:Y.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, Y.S. et al., Using ligand-mapping simulations to design a ligand selectively targeting a cryptic surface pocket of polo-like kinase 1. Angew.Chem.Int.Ed.Engl. (2012)

Release Date

2012-10-10

Peptides

Serine/threonine-protein kinase PLK1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase PLK1

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