SMTL ID : 4e6w.2 (1 other biounit)

ClbP in complex with 3-aminophenyl boronic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

2 x APB: M-AMINOPHENYLBORONIC ACID(Covalent)

APB.1: 9 residues within 4Å: Chain A: S.55, K.58, Y.146, S.148, F.276, H.287, G.288, G.289, Q.290 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.146, A:Q.290 Hydrogen bonds: A:S.55, A:K.58, A:Y.146, A:H.287, A:G.288, A:Q.290 Water bridges: A:S.148 APB.4: 9 residues within 4Å: Chain B: S.55, K.58, Y.146, S.148, F.276, H.287, G.288, G.289, Q.290 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.146, B:Q.290 Hydrogen bonds: B:S.55, B:K.58, B:G.288, B:Q.290 Water bridges: B:S.148

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: F.144, N.267, I.269, F.276 Ligands: PO4.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.267, A:I.269 PO4.3: 5 residues within 4Å: Chain A: F.276, S.286 Chain B: A.265, D.266 Ligands: PO4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.286 PO4.5: 5 residues within 4Å: Chain B: F.144, N.267, I.269, F.276 Ligands: PO4.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.267, B:I.269 PO4.6: 5 residues within 4Å: Chain A: A.265, D.266 Chain B: F.276, S.286 Ligands: PO4.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cougnoux, A. et al., The NRP peptidase ClbP as a target for the inhibition of genotoxicity, cell proliferation and tumorogenesis mediated by pks-harboring bacteria. To be Published

Release Date

2013-03-27

Peptides

ClbP peptidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

ClbP peptidase

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