SMTL ID : 4e7g.1

E. cloacae C115D/R120A MurA in the unliganded state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 5 residues within 4Å: Chain A: R.227, P.230, N.253, A.254, D.278 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.254 Water bridges: A:R.227

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: Q.42, V.225, R.227 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.42 Water bridges: A:Q.42, A:R.227 EDO.3: 5 residues within 4Å: Chain A: F.80, S.81, Q.106, G.107, Q.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.107, A:G.107 Water bridges: A:A.145 EDO.4: 4 residues within 4Å: Chain A: A.200, L.201, G.222, G.223 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.223, A:G.223 Water bridges: A:R.220, A:R.220 EDO.5: 4 residues within 4Å: Chain A: R.91, A.92, W.95 Ligands: EDO.9 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.92 EDO.6: 1 residues within 4Å: Chain A: E.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.37 EDO.7: 6 residues within 4Å: Chain A: T.304, D.305, E.325, F.328, A.331, K.369 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.305, A:D.305 EDO.8: 5 residues within 4Å: Chain A: A.291, V.292, T.293, T.320, G.321 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.293 Water bridges: A:V.292, A:V.322 EDO.9: 5 residues within 4Å: Chain A: N.23, W.95, V.163, E.190 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.23 EDO.10: 4 residues within 4Å: Chain A: A.261, K.265, A.301, F.302 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.265, A:K.265, A:F.302 EDO.11: 8 residues within 4Å: Chain A: A.21, N.23, E.190, D.231, R.232, I.233, D.305, R.371 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.23, A:D.231, A:R.371 Water bridges: A:R.232 EDO.12: 4 residues within 4Å: Chain A: K.46, L.47, K.48, D.51 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.51 Water bridges: A:L.47, A:K.48 EDO.13: 3 residues within 4Å: Chain A: R.187, T.210, D.211 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.211, A:D.211

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.14: 4 residues within 4Å: Chain A: A.120, V.122, D.123, L.138 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J.-Y. et al., Open-close transition of MurA. To be Published

Release Date

2013-03-20

Peptides

UDP-N-acetylglucosamine 1-carboxyvinyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-acetylglucosamine 1-carboxyvinyltransferase