SMTL ID : 4e7z.1 (1 other biounit)

Myosin VI (MD) pre-powerstroke state, P21 crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 21 residues within 4Å: Chain A: I.95, N.107, P.108, Y.109, F.110, D.111, Y.116, E.161, S.162, G.163, A.164, G.165, K.166, T.167, E.168, F.172, N.209, N.211, L.319 Ligands: VO4.2, MG.3 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:N.107, A:Y.116, A:G.163, A:A.164, A:G.165, A:K.166, A:T.167, A:E.168, A:N.209, A:N.211 Water bridges: A:E.168, A:E.168, A:N.169, A:N.211, A:S.213, A:S.213, A:D.317 Salt bridges: A:K.166

1 x VO4: VANADATE ION(Non-covalent)

VO4.2: 10 residues within 4Å: Chain A: S.162, G.163, K.166, N.209, S.212, S.213, A.467, G.468 Ligands: ADP.1, MG.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.163, A:K.166, A:N.209, A:S.212, A:S.213, A:G.468 Water bridges: A:S.162, A:N.203, A:T.206, A:S.212, A:S.213

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: T.167, S.213, D.465 Ligands: ADP.1, VO4.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.167, A:S.213, H2O.2, H2O.6

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: E.168, K.171, P.196, E.199, N.211, R.259, L.319, D.325 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.171, A:P.196, A:E.199, A:N.211, A:R.259, A:R.259 Water bridges: A:D.325, A:R.328 GOL.5: 7 residues within 4Å: Chain A: G.160, E.161, F.591, A.592, C.677, Q.697, S.701 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.160, A:N.486, A:C.677 Water bridges: A:E.161, A:E.161 GOL.6: 6 residues within 4Å: Chain A: N.293, K.294, D.297, G.313, S.314, K.316 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.293, A:S.314, A:K.316, A:K.316 GOL.7: 8 residues within 4Å: Chain A: A.262, G.263, A.264, Q.299, I.300, L.301, R.304, H.323 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.262, A:L.301, A:R.304

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Menetrey, J. et al., Processive Steps in the Reverse Direction Require Uncoupling of the Lead Head Lever Arm of Myosin VI. Mol.Cell (2012)

Release Date

2012-09-19

Peptides

Myosin-VI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myosin-VI

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