SMTL ID : 4e89.2 (1 other biounit)

Crystal Structure of RnaseH from gammaretrovirus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

8 x CD: CADMIUM ION(Non-covalent)

CD.1: 5 residues within 4Å: Chain A: D.5, H.86 Chain B: D.5, H.86 Ligands: CD.6 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:D.5, A:H.86, B:D.5, B:H.86 CD.2: 4 residues within 4Å: Chain A: C.129 Chain B: H.88, E.90 Ligands: CD.3 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.129, B:H.88, B:E.90 CD.3: 5 residues within 4Å: Chain A: C.129, H.132, E.139 Chain B: E.90 Ligands: CD.2 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.129, A:E.139, A:E.139, B:E.90, B:E.90 CD.4: 1 residues within 4Å: Chain A: E.39 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.39, A:E.39 CD.6: 5 residues within 4Å: Chain A: D.5, H.86 Chain B: D.5, H.86 Ligands: CD.1 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:D.5, A:H.86, B:D.5, B:H.86 CD.7: 4 residues within 4Å: Chain A: H.88, E.90 Chain B: C.129 Ligands: CD.8 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.129, A:H.88, A:E.90 CD.8: 5 residues within 4Å: Chain A: E.90 Chain B: C.129, H.132, E.139 Ligands: CD.7 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.129, B:E.139, B:E.139, A:E.90, A:E.90 CD.9: 1 residues within 4Å: Chain B: E.39 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.39, B:E.39

2 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 4 residues within 4Å: Chain A: D.18, G.19, E.56, D.77 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.18, A:E.56, A:D.77 MG.10: 4 residues within 4Å: Chain B: D.18, G.19, E.56, D.77 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.18, B:E.56, B:D.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, J.H. et al., Crystal structure of xenotropic murine leukaemia virus-related virus (XMRV) ribonuclease H. Biosci.Rep. (2012)

Release Date

2012-10-17

Peptides

RNase H: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

RNase H

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