SMTL ID : 4e9x.1

Multicopper Oxidase mgLAC (data3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

homo-trimer

Ligands

12 x CU: COPPER (II) ION(Non-covalent)

CU.1: 6 residues within 4Å: Chain A: P.56, H.57, C.105, V.107, H.112, M.118 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.57, A:C.105, A:H.112 CU.2: 6 residues within 4Å: Chain A: H.62, W.102, H.104 Chain B: H.254 Ligands: CU.8, OXY.9 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.62, A:H.104, B:H.254 CU.3: 5 residues within 4Å: Chain A: H.204, H.206, H.252 Chain C: H.106 Ligands: OXY.5 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Metal complexes: C:H.106, A:H.206, A:H.252 CU.4: 6 residues within 4Å: Chain A: H.204, H.206 Chain C: H.60, H.62 Ligands: OXY.5, CU.16 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: C:H.60, A:H.204, H2O.23 CU.7: 5 residues within 4Å: Chain A: H.106 Chain B: H.204, H.206, H.252 Ligands: OXY.9 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Metal complexes: A:H.106, B:H.206, B:H.252 CU.8: 6 residues within 4Å: Chain A: H.60, H.62 Chain B: H.204, H.206 Ligands: CU.2, OXY.9 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:H.60, B:H.204, H2O.1 CU.10: 6 residues within 4Å: Chain B: P.56, H.57, C.105, V.107, H.112, M.118 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.57, B:C.105, B:H.112 CU.11: 6 residues within 4Å: Chain B: H.62, W.102, H.104 Chain C: H.254 Ligands: OXY.12, CU.14 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Metal complexes: B:H.62, B:H.104, C:H.254 CU.13: 5 residues within 4Å: Chain B: H.106 Chain C: H.204, H.206, H.252 Ligands: OXY.12 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Metal complexes: C:H.206, C:H.252, B:H.106 CU.14: 6 residues within 4Å: Chain B: H.60, H.62 Chain C: H.204, H.206 Ligands: CU.11, OXY.12 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: B:H.60, C:H.204, H2O.11 CU.15: 6 residues within 4Å: Chain C: P.56, H.57, C.105, V.107, H.112, M.118 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.57, C:C.105, C:H.112 CU.16: 6 residues within 4Å: Chain A: H.254 Chain C: H.62, W.102, H.104 Ligands: CU.4, OXY.5 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Metal complexes: C:H.62, C:H.104, A:H.254

3 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.5: 11 residues within 4Å: Chain A: H.204, H.206, H.252, H.254 Chain C: H.60, H.62, H.104, H.106 Ligands: CU.3, CU.4, CU.16 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.62 OXY.9: 11 residues within 4Å: Chain A: H.60, H.62, H.104, H.106 Chain B: H.204, H.206, H.252, H.254 Ligands: CU.2, CU.7, CU.8 No protein-ligand interaction detected (PLIP) OXY.12: 11 residues within 4Å: Chain B: H.60, H.62, H.104, H.106 Chain C: H.204, H.206, H.252, H.254 Ligands: CU.11, CU.13, CU.14 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: K.184, K.185, Y.275, D.276, G.277 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komori, H. et al., New insights into the catalytic active-site structure of multicopper oxidases. Acta Crystallogr.,Sect.D (2014)

Release Date

2013-03-27

Peptides

Multicopper oxidase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Multicopper oxidase

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