SMTL ID : 4eaq.1

Crystal structure of Thymidylate Kinase from Staphylococcus aureus in complex with 3'-Azido-3'-Deoxythymidine-5'-Monophosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x ATM: 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE(Non-covalent)

ATM.1: 12 residues within 4Å: Chain A: E.35, K.39, R.60, E.61, R.72, F.90, R.94, R.116, S.120, S.121, Y.124, Q.125 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.124 Hydrogen bonds: A:E.35, A:R.94, A:R.94, A:Q.125, A:Q.125 Water bridges: A:R.116, A:R.116 Salt bridges: A:K.39, A:R.60, A:R.116 pi-Stacking: A:F.90 ATM.2: 12 residues within 4Å: Chain B: E.35, K.39, R.60, E.61, R.72, F.90, R.94, R.116, S.120, S.121, Y.124, Q.125 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:R.116, B:Y.124 Hydrogen bonds: B:R.72, B:R.94, B:R.94, B:R.116, B:Y.124, B:Q.125, B:Q.125 Water bridges: B:E.35, B:R.60, B:R.60 Salt bridges: B:K.39, B:R.60, B:R.116 pi-Stacking: B:F.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippova, E.V. et al., Crystal structure of Thymidylate Kinase from Staphylococcus aureus in complex with 3'-Azido-3'-Deoxythymidine-5'-Monophosphate. To be Published

Release Date

2012-04-11

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate kinase

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