SMTL ID : 4eaw.1 (1 other biounit)

HCV NS5B in complex with IDX375

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 0NQ: N-{(1S)-3-[(5S)-5-tert-butyl-1-(3,3-dimethylbutyl)-4-hydroxy-2-oxo-2,5-dihydro-1H-pyrrol-3-yl]-1-ethoxy-1-oxido-1,4-dihydro-2,4,1-benzodiazaphosphinin-7-yl}methanesulfonamide(Non-covalent)

0NQ.1: 19 residues within 4Å: Chain A: F.193, R.200, S.288, N.291, Y.316, G.317, D.318, C.366, S.368, L.384, G.410, N.411, M.414, Y.415, Q.446, I.447, Y.448, G.449, S.556 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.384, A:Y.415, A:Y.415, A:Y.448 Hydrogen bonds: A:N.291, A:D.318, A:D.318, A:Q.446, A:Y.448, A:G.449 Water bridges: A:S.556, A:S.556 pi-Stacking: A:F.193

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.505, V.530, R.531, T.532 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.531, A:T.532, A:T.532, A:T.532 Salt bridges: A:R.505 SO4.3: 3 residues within 4Å: Chain A: R.48, R.222, C.223 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.223 Water bridges: A:R.222, A:F.224, A:F.224 Salt bridges: A:R.48 SO4.4: 2 residues within 4Å: Chain A: G.516, R.517 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.517 Water bridges: A:A.518 Salt bridges: A:R.517 SO4.5: 3 residues within 4Å: Chain A: H.475, S.476 Ligands: SO4.7 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.476 Water bridges: A:H.475, A:H.475, A:Y.477 Salt bridges: A:H.475 SO4.6: 4 residues within 4Å: Chain A: L.60, Y.64, R.65, L.68 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.65, A:S.238 SO4.7: 6 residues within 4Å: Chain A: M.423, L.474, H.475, Y.477, W.528 Ligands: SO4.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.474 Water bridges: A:R.422, A:S.476

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 6 residues within 4Å: Chain A: E.143, F.145, K.155, R.386, T.390, R.394 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.386, A:R.386, A:T.390, A:T.390, A:R.394, A:R.394 Water bridges: A:E.143, A:E.143 PEG.9: 8 residues within 4Å: Chain A: Y.4, R.48, L.159, V.161, D.225, R.280, A.281, S.282 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.4, A:Y.4, A:R.48, A:S.282 Water bridges: A:L.159, A:S.282

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.10: 2 residues within 4Å: Chain A: K.79, D.244 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.79 EDO.11: 6 residues within 4Å: Chain A: L.82, L.83, S.84, I.85, W.123, M.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.83 Water bridges: A:I.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dousson, C.B. et al., HCV NS5B in complex with IDX375. To be Published

Release Date

2013-03-27

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

Related Entries With Identical Sequence