SMTL ID : 4ebz.1

Crystal structure of the ectodomain of a receptor like kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: N.28, S.29, S.30, Y.34 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 7 residues within 4Å: Chain A: Y.13, E.15, E.90, I.94, A.98, N.99, R.149 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.94 NAG-NAG.3: 6 residues within 4Å: Chain A: F.74, T.101, T.102, S.105, L.126, N.128 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- BMA: alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-BMA.4: 6 residues within 4Å: Chain A: C.69, Q.70, P.71, N.78, R.109, N.124 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-NAG-NAG.5: 15 residues within 4Å: Chain A: V.83, R.84, Q.85, E.86, D.87, T.88, Y.89, E.90, M.103, Q.107, A.114, T.115, N.116, I.117, L.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.116 Water bridges: A:Q.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, T. et al., Chitin-induced dimerization activates a plant immune receptor. Science (2012)

Release Date

2012-06-27

Peptides

Chitin elicitor receptor kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitin elicitor receptor kinase 1

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