SMTL ID : 4ech.1

Yeast Polyamine Oxidase FMS1, H67Q Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 39 residues within 4Å: Chain A: I.14, G.15, A.16, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.45, G.46, R.47, L.48, G.62, A.63, S.64, W.65, Q.67, Y.201, C.221, E.222, V.223, T.252, V.253, P.254, V.257, G.270, L.294, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:L.294, A:A.449, A:Y.450 Hydrogen bonds: A:I.18, A:A.19, A:A.40, A:R.41, A:R.41, A:R.47, A:A.63, A:S.64, A:W.65, A:W.65, A:Q.67, A:Y.201, A:V.223, A:V.223, A:E.479, A:G.487, A:A.489 Water bridges: A:G.17, A:G.17, A:G.46, A:R.47, A:R.47, A:L.48, A:L.48, A:Q.67 Salt bridges: A:R.47, A:R.47 pi-Stacking: A:Y.445 FAD.2: 37 residues within 4Å: Chain B: I.14, G.15, A.16, G.17, I.18, A.19, L.38, E.39, A.40, R.41, G.45, G.46, R.47, I.61, G.62, A.63, S.64, W.65, Q.67, C.221, E.222, V.223, T.252, V.253, P.254, G.270, L.294, W.440, Y.445, A.449, Y.450, G.478, E.479, G.487, C.488, A.489, A.492 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:L.294, B:W.440, B:A.449, B:Y.450 Hydrogen bonds: B:G.15, B:I.18, B:A.19, B:A.40, B:R.41, B:R.41, B:G.46, B:R.47, B:A.63, B:S.64, B:W.65, B:W.65, B:Q.67, B:Y.201, B:V.223, B:V.223, B:E.479, B:G.487, B:A.489 Water bridges: B:G.17, B:T.252 Salt bridges: B:R.47, B:R.47 pi-Stacking: B:Y.445

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adachi, M.S. et al., Mechanistic and structural analyses of the role of his67 in the yeast polyamine oxidase fms1. Biochemistry (2012)

Release Date

2012-06-13

Peptides

Polyamine oxidase FMS1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Polyamine oxidase FMS1