SMTL ID : 4ecp.1

X-ray crystal structure of Inorganic Pyrophosphate PPA from Mycobacterium leprae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-hexamer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: D.57, P.60, D.62, D.94, K.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.47 EDO.2: 6 residues within 4Å: Chain A: V.82, G.112, I.113, I.114, G.147, R.148 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.113, A:I.114, A:R.148 EDO.3: 5 residues within 4Å: Chain B: D.57, P.60, D.62, D.94, K.96 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.47, B:Y.47 Water bridges: B:D.59 EDO.4: 5 residues within 4Å: Chain C: D.57, P.60, D.62, D.94, K.96 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Y.47 EDO.5: 6 residues within 4Å: Chain C: V.82, G.112, I.113, I.114, G.147, R.148 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:I.113, C:I.114, C:R.148 EDO.6: 5 residues within 4Å: Chain D: D.57, P.60, D.62, D.94, K.96 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Y.47, D:Y.47 Water bridges: D:D.59 EDO.7: 5 residues within 4Å: Chain E: D.57, P.60, D.62, D.94, K.96 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:Y.47 EDO.8: 6 residues within 4Å: Chain E: V.82, G.112, I.113, I.114, G.147, R.148 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:I.113, E:I.114, E:R.148 EDO.9: 5 residues within 4Å: Chain F: D.57, P.60, D.62, D.94, K.96 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:Y.47, F:Y.47 Water bridges: F:D.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fairman, J.W. et al., X-ray crystal structure of Inorganic Pyrophosphate PPA from Mycobacterium leprae. TO BE PUBLISHED

Release Date

2012-04-18

Peptides

Inorganic pyrophosphatase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Inorganic pyrophosphatase