SMTL ID : 4ed5.1 (1 other biounit)

Crystal structure of the two N-terminal RRM domains of HuR complexed with RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: G.1, T.3, V.52, T.53, A.54 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.1, A:V.52, A:A.54 Water bridges: A:T.3, A:T.53, A:K.55 GOL.2: 4 residues within 4Å: Chain A: T.101, Q.102, V.120, V.122 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.102, A:V.120 Water bridges: A:T.101, A:K.103, A:V.120, A:V.122 GOL.3: 2 residues within 4Å: Chain A: S.129, R.130 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.129, A:R.130 GOL.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.5: 4 residues within 4Å: Chain A: S.94, G.95, E.160, T.163 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.94, A:E.160, A:E.160, A:T.163, A:T.163 GOL.9: 6 residues within 4Å: Chain A: L.121, V.122, R.130 Chain B: U.3, U.4, U.5 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.122, A:V.122, A:R.130 Water bridges: A:Q.124 GOL.10: 9 residues within 4Å: Chain A: Y.9, N.117, S.118, R.119, F.134 Chain B: U.4, U.5, A.7, U.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.9, A:R.119 Water bridges: A:Y.9, A:R.136

1 x M2M: 1-METHOXY-2-(2-METHOXYETHOXY)ETHANE(Non-covalent)

M2M.6: 9 residues within 4Å: Chain A: I.61, N.65, T.73, I.74, K.75, V.76, S.77 Chain B: U.5 Ligands: EDO.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.65

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 3 residues within 4Å: Chain A: T.99, M.100, D.104 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.104 EDO.8: 4 residues within 4Å: Chain A: E.58, I.61, Y.78 Ligands: M2M.6 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, H. et al., The structure of the ARE-binding domains of Hu antigen R (HuR) undergoes conformational changes during RNA binding. Acta Crystallogr.,Sect.D (2013)

Release Date

2012-05-23

Peptides

ELAV-like protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ELAV-like protein 1

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