SMTL ID : 4ed6.1

Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 6.7 for 15 hr, Sideway translocation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

1 x DA- DG- DC- DG- DT- DC- DA- DT- DA: DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*A)-3')(Non-covalent)

DA-DG-DC-DG-DT-DC-DA-DT-DA.1: 29 residues within 4Å: Chain A: F.20, F.21, I.51, R.64, L.92, I.117, D.118, K.227, R.259, S.260, L.261, G.262, G.263, K.264, L.265, R.380, L.384, R.385, R.386, C.387 Chain B: T.4, A.5, T.6, G.7, A.8, C.9, G.10, C.11, T.12 Protein-ligand interaction information (PLIP) not available

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: P.247, F.250, S.251, G.279, E.280 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.280, A:T.282 GOL.3: 3 residues within 4Å: Chain A: N.29, P.30, H.31 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, T. et al., Watching DNA polymerase eta make a phosphodiester bond. Nature (2012)

Release Date

2012-07-11

Peptides

DNA polymerase eta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase eta

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