- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 4NF: N-(4-nitrophenyl)thioformamide(Covalent)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.2: 24 residues within 4Å:- Chain A: A.53, A.54, G.55, V.56, K.78, S.79, Y.93, N.102, M.104, N.162, K.199, I.228, N.229, S.230, G.256, G.257, V.260, C.283, G.284, G.285, V.305, G.306, T.307
- Ligands: SO4.3
22 PLIP interactions:22 interactions with chain A- Hydrophobic interactions: A:V.56, A:Y.93, A:Y.93
- Hydrogen bonds: A:A.54, A:S.79, A:S.79, A:S.79, A:K.199, A:K.199, A:N.229, A:G.257, A:G.285, A:G.306, A:T.307, A:T.307
- Water bridges: A:K.78, A:N.162, A:N.162, A:G.284, A:G.284, A:V.286, A:V.286
FMN.10: 23 residues within 4Å:- Chain B: A.53, A.54, G.55, V.56, K.78, S.79, Y.93, N.102, M.104, N.162, K.199, I.228, N.229, S.230, G.256, G.257, V.260, C.283, G.284, G.285, G.306, T.307
- Ligands: SO4.11
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:V.56, B:Y.93, B:Y.93
- Hydrogen bonds: B:A.54, B:S.79, B:S.79, B:S.79, B:K.199, B:K.199, B:N.229, B:G.257, B:G.284, B:G.285, B:G.306, B:T.307
- Water bridges: B:K.78, B:N.162, B:N.162, B:G.284, B:V.286, B:V.286
- 7 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 9 residues within 4Å:- Chain A: K.78, N.102, M.104, G.105, L.106, P.107, C.165, N.167
- Ligands: FMN.2
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.105, A:L.106, A:N.167
- Water bridges: A:N.102, A:N.229
- Salt bridges: A:K.78
SO4.4: 3 residues within 4Å:- Chain A: P.193, H.194, S.195
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.195
- Salt bridges: A:H.194
SO4.6: 5 residues within 4Å:- Chain A: T.59, R.85, P.107, N.108, N.109
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.109
SO4.7: 2 residues within 4Å:- Chain A: Y.93, M.104
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.310
- Water bridges: A:R.92, A:Y.93
SO4.8: 6 residues within 4Å:- Chain A: L.96, P.97, V.236, I.237, D.238
- Ligands: GOL.5
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:I.237
- Water bridges: A:Q.94, A:A.239, A:A.239
SO4.11: 9 residues within 4Å:- Chain B: K.78, N.102, M.104, G.105, L.106, P.107, C.165, N.167
- Ligands: FMN.10
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:G.105, B:L.106, B:N.167
- Water bridges: B:N.102, B:N.229, B:N.229
- Salt bridges: B:K.78
SO4.13: 5 residues within 4Å:- Chain B: T.59, R.85, P.107, N.108, N.109
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.85
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: V.236, I.237
- Chain B: L.261, L.265, L.294
- Ligands: SO4.8
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:I.237
- Water bridges: A:Y.259, B:D.291
GOL.12: 5 residues within 4Å:- Chain A: L.261, L.265, L.294
- Chain B: V.236, I.237
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:I.237
- Water bridges: B:I.237
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pinheiro, M.P. et al., Target sites for the design of anti-trypanosomatid drugs based on the structure of dihydroorotate dehydrogenase. Curr.Pharm.Des. (2013)
- Release Date
- 2012-12-12
- Peptides
- Dihydroorotate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 4NF: N-(4-nitrophenyl)thioformamide(Covalent)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 7 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pinheiro, M.P. et al., Target sites for the design of anti-trypanosomatid drugs based on the structure of dihydroorotate dehydrogenase. Curr.Pharm.Des. (2013)
- Release Date
- 2012-12-12
- Peptides
- Dihydroorotate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B