SMTL ID : 4eg0.1

Crystal Structure of D-alanine--D-alanine ligase from Burkholderia ambifaria

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Y.94, T.95, G.96, D.261 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.94, A:D.261 Water bridges: A:G.98, A:T.260 EDO.2: 4 residues within 4Å: Chain A: E.26, E.79, N.281, A.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.281, A:A.283 EDO.3: 6 residues within 4Å: Chain B: R.264, P.284, G.285, S.290, L.291, P.292 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.264, B:G.285, B:L.291 Water bridges: B:S.290 EDO.4: 3 residues within 4Å: Chain B: P.239, A.240, E.241 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.240 EDO.5: 1 residues within 4Å: Chain B: D.43 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2012-05-09

Peptides

D-alanine--D-alanine ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-alanine--D-alanine ligase